Asymmetric organocatalytic synthesis of chiral homoallylic amines

• Nikolay S. Kondratyev and
• Andrei V. Malkov

Beilstein J. Org. Chem. 2024, 20, 2349–2377, doi:10.3762/bjoc.20.201

• the asymmetric addition of organoboron reagents to imines (Scheme 3). An intermolecular hydrogen bonding between a non-rigid organocatalyst and a non-rigid substrate was shown to play a key role in assembling a configurationally stable transition structure. As a result, this approach unveiled the

• highly enantioselective nucleophilic addition of primary (10), secondary, and even tertiary allylboronates, as well as allenylboronates to a broad set of imines, bearing the N-phosphinoyl group. The new approach allowed the activation of both the substrate and the reagent using aminophenol organocatalyst

• ,β-unsaturated imines 9. However, with ethynylimines 12, the enantioselectivity dropped to a modest level. In addition, the reaction with sterically hindered tertiary allylboronates, such as the chiral (R)-α-cyclohexyl-α-methyl-allylboronate required the use of catalytic amounts of zinc tert-butoxide

Tandem diazotization/cyclization approach for the synthesis of a fused 1,2,3-triazinone-furazan/furoxan heterocyclic system

• Yuri A. Sidunets,
• Valeriya G. Melekhina and
• Leonid L. Fershtat

Beilstein J. Org. Chem. 2024, 20, 2342–2348, doi:10.3762/bjoc.20.200

• a 1,2,3-triazin-4-one core. The proposed method is based on tandem diazotization/azo coupling reactions of the corresponding amides (Scheme 1). In addition, application perspectives of thus prepared heterocyclic entities as thermally stable components of functional organic materials or NO-donor drug

Improved deconvolution of natural products’ protein targets using diagnostic ions from chemical proteomics linkers

• Andreas Wiest and
• Pavel Kielkowski

Beilstein J. Org. Chem. 2024, 20, 2323–2341, doi:10.3762/bjoc.20.199

• probe–protein interaction leading to disappearance of the fluorescent bands. A gel shift assay is a complementary strategy to validate the labeling of a specific protein (Figure 6B) [65][79]. The assay is based on an increased retardation of the probe-labeled protein on SDS-PAGE due to the addition of a

• tag in cell lysate, the proteins are loaded onto the carboxylate magnetic beads and aggregated with the beads by addition of an organic solvent, for example ethanol or acetonitrile. The subsequent washes of the carboxylate magnetic beads with proteins by an organic solvent–water mixture or organic

Stereoselective mechanochemical synthesis of thiomalonate Michael adducts via iminium catalysis by chiral primary amines

• Michał Błauciak,
• Dominika Andrzejczyk,
• Błażej Dziuk and
• Rafał Kowalczyk

Beilstein J. Org. Chem. 2024, 20, 2313–2322, doi:10.3762/bjoc.20.198

• significant advancement in mechanocatalysis. The stereoselective addition of bisthiomalonates 1–4 to cyclic enones and 4-chlorobenzylideneacetone proceeds stereoselectively under iminium activation conditions secured by chiral primary amines, in contrast to oxo-esters as observed in dibenzyl malonate addition

• attention. The controlled formation of C–C and C–X bonds in a stereoselective fashion has found extensive application in asymmetric synthesis. Notably, the addition of malonates has attracted significant interest, albeit primarily limited to methyl or ethyl diesters [18][19][20]. The combination of iminium

• catalysis with hydrogen bonding units has been essential for achieving high reactivity and enantioselectivities [21][22]. Additionally, the reactivity of the nucleophilic addition is influenced by substitutions near the electron-poor double bond. This approach requires 30 mol % of catalyst and a reaction

Hydrogen-bond activation enables aziridination of unactivated olefins with simple iminoiodinanes

• Phong Thai,
• Lauv Patel,
• Diyasha Manna and
• David C. Powers

Beilstein J. Org. Chem. 2024, 20, 2305–2312, doi:10.3762/bjoc.20.197

• of 25 µL HFIP in MeCN showed no electrochemical events between −2.0–0 V. The CV of 2c in the absence of HFIP showed a reductive current (ip = −0.80 mA) at peak potential (Epr) of –1.72 V vs Fc+/Fc. Upon addition of 5.0 µL of HFIP (1.2 equiv with respect to 2c), the current increased to −1.22 mA

• −1.52 V, respectively. The titration showed a saturation point at 25 µL of HFIP (6.0 equiv with respect to 2c), at which the CV of 2c showed an Epr = –1.47 V and –1.52 mA current. Overall, the addition of HFIP results in a 250 mV shift in the reduction of 2c. The increased facility of reduction is

• aliphatic olefins in the absence of transition metal catalysts, the addition of HFIP enables direct aziridination to be observed. The enhanced reactivity is rationalized as resulting from H-bonding between HFIP and the nitrogen center of the iminoiodinane reagents. 1H NMR data are consistent with such an

Catalysing (organo-)catalysis: Trends in the application of machine learning to enantioselective organocatalysis

• Stefan P. Schmid,
• Leon Schlosser,
• Frank Glorius and
• Kjell Jorner

Beilstein J. Org. Chem. 2024, 20, 2280–2304, doi:10.3762/bjoc.20.196

• addition, such larger data sets also lead to an increased interest in the application of deep learning tools, such as graph-based neural networks, to organocatalysis. One particular example was published by Hong and co-workers [113], who developed a chemistry-informed graph model for the prediction of

• , Corminboeuf and co-workers reported OSCAR, a computational repository of 4,000 organocatalyst structures mined from the literature and Cambridge Structural Database (CSD) [31]. In addition, the authors utilised the combinatorial nature of organocatalysts to create data bases comprising more than 8,000 NHC

• complement and augment experimental chemistry. In addition to these methods, Corminboeuf and co-workers [134] proposed a genetic algorithm for the de novo design of general catalysts (Figure 14). Considering the Pictet–Spengler cyclization of tryptamine derivatives catalysed by hydrogen-bond donors, the

gem-Difluorination of carbon–carbon triple bonds using Brønsted acid/Bu₄NBF₄ or electrogenerated acid

• Mizuki Yamaguchi,
• Hiroki Shimao,
• Kengo Hamasaki,
• Keiji Nishiwaki,
• Shigenori Kashimura and
• Kouichi Matsumoto

Beilstein J. Org. Chem. 2024, 20, 2261–2269, doi:10.3762/bjoc.20.194

• fluorobenziodoxole, are also utilized as F+ equivalents to introduce fluorine atoms into organic molecules. In addition, various trifluoromethylation reagents have been developed so far [5][6][7][8][9][10][11][12][13][14][15][16][17][18]. Transition-metal-catalyzed fluorination and trifluoromethylation methods have

• blocks for further transformations. We have focused on the investigation of gem-difluorination of carbon–carbon triple bonds, because this procedure is one of the most simple but powerful and straightforward methods. In addition, there have been a few reports in the literature that seem to mainly rely on

• to be a good reagent for the gem-difluorination of alkynes, reported by Hammond and Xu (Figure 1, reaction 3) [37]. HF/DMPU is easy to handle under experimental conditions. In addition, they recently reported the utilization of a combination of KHSO4·13HF and DMPU·12HF under neat conditions for the

Synthesis and reactivity of the di(9-anthryl)methyl radical

• Tomohiko Nishiuchi,
• Kazuma Takahashi,
• Yuta Makihara and
• Takashi Kubo

Beilstein J. Org. Chem. 2024, 20, 2254–2260, doi:10.3762/bjoc.20.193

• to the DAntM radical is shown in Scheme 1. The alcohol precursor 3 was prepared via addition reaction of lithium reagent 2 to 10-mesitylanthracene-9-carbaldehyde (1) in moderate yield (59%). The generation of the DAntM radical was performed using stannous chloride dihydrate with hydrogen chloride in

• pathway involving hydrogen abstraction from water yielding 4, and a major pathway involving oxygen addition to the central carbon to afford 1,2-dioxetane (DOT) intermediate. Usually, DOT derivatives are known to readily decompose [38], and this DOT intermediate is also considered to decompose upon C–C and

Cell-free protein synthesis with technical additives – expanding the parameter space of in vitro gene expression

• Tabea Bartsch,
• Stephan Lütz and
• Katrin Rosenthal

Beilstein J. Org. Chem. 2024, 20, 2242–2253, doi:10.3762/bjoc.20.192

• tested additives. Keywords: cell-free protein synthesis; cGAS; Escherichia coli cell-free extract; sfGFP; TX-TL; Introduction In addition to other applications such as biomanufacturing or biosensing, cell-free protein synthesis (CFPS) of enzymes has established itself as a tool for rapid screening of

• on the metabolism [6]. Furthermore, protein synthesis takes only a few hours [7], making the process very fast compared to heterologous expression. CFPS relies on the transcription and translation (TX-TL) system of the donor organism [8]. In addition, the reaction solution contains the DNA-template

• of the intracellular environment on the function and cellular behavior of proteins are composition, viscosity, and macromolecular crowding [16], these parameters could have a strong impact on the protein synthesis performance using CFPS. For example, the addition of chemical chaperones, such as

Metal-free double azide addition to strained alkynes of an octadehydrodibenzo[12]annulene derivative with electron-withdrawing substituents

• Naoki Takeda,
• Shuichi Akasaka,
• Susumu Kawauchi and
• Tsuyoshi Michinobu

Beilstein J. Org. Chem. 2024, 20, 2234–2241, doi:10.3762/bjoc.20.191

• the field of bioconjugation and materials research. We previously reported a regioselective double addition of organic azides to octadehydrodibenzo[12]annulene derivatives with electron-rich alkyloxy substituents. In order to increase the reaction rate, electron-withdrawing substituents were

• introduced into octadehydrodibenzo[12]annulene. In this report, the synthesis of new octadehydrodibenzo[12]annulene derivatives, regioselective double addition of organic azides, and an application to crosslinking polymers are described. Keywords: annulene; click chemistry; polymerization; strain-promoted

• ], and crosslinked polymers [14][15][16][17]. Since crosslinking polymers requires high reaction efficiency under mild conditions, developing such reactions is crucial. We previously reported the regioselective double azide addition to octadehydrodibenzo[12]annulene with hexyloxy substituents (DBA-OHex

Selective hydrolysis of α-oxo ketene N,S-acetals in water: switchable aqueous synthesis of β-keto thioesters and β-keto amides

• Haifeng Yu,
• Wanting Zhang,
• Xuejing Cui,
• Zida Liu,
• Xifu Zhang and
• Xiaobo Zhao

Beilstein J. Org. Chem. 2024, 20, 2225–2233, doi:10.3762/bjoc.20.190

• thioesters and acyl chlorides (Scheme 1a, path 7) [30]. For β-keto amides, they could be efficiently synthesized from the nucleophilic substitution reactions of amines with β-keto acids (Scheme 1b, path 1) [31][32][33], β-keto esters (Scheme 1b, path 2) [34] and the nucleophilic addition reactions of amines

• and nonflammability. In addition, the use of water solvent can reduce the discharge of harmful organic solvents [42][43][44][45][46][47][48][49][50]. In the past 10 years, while expanding the synthesis and application of α-oxo ketene dithioacetal derivatives [51][52][53][54][55][56][57][58][59][60][61

• carbocation of I produces intermediate II, which converts into intermediate III through a deprotonation–protonation process. Finally, the elimination of PhNH2 from intermediate III occurs to afford the desired product 2a. In the presence of NaOH, the Michael addition between 1a and base initially occurs to

Electrochemical allylations in a deep eutectic solvent

• Sophia Taylor and
• Scott T. Handy

Beilstein J. Org. Chem. 2024, 20, 2217–2224, doi:10.3762/bjoc.20.189

• (entry 1) resulted in good conversion to the allylation product, while zinc, magnesium, and graphite (Table 1, entries 3–5) displayed no reaction at all. This observation was somewhat surprising considering that both zinc and tin are very commonly used in conventional allylations in addition to as

• conversion, but the reaction was much less efficient than for allyl bromide. More substituted allyl bromides, such as crotyl and prenyl bromide (Table 3, entries 3 and 4) did react, although they afforded only partial conversion when using 2.5 F/mol of current. In terms of regiochemistry, addition at the

• more substituted end (gamma addition) was the major product in both cases, although alpha addition was also observed. In the case of crotyl bromide, no diastereoselectivity was noted for the gamma product. Non-allylic halides such as benzyl bromide, propargyl bromide, and ethyl bromoacetate (Table 3

Heterocycle-guided synthesis of m-hetarylanilines via three-component benzannulation

• Andrey R. Galeev,
• Maksim V. Dmitriev,
• Alexander S. Novikov and
• Andrey N. Maslivets

Beilstein J. Org. Chem. 2024, 20, 2208–2216, doi:10.3762/bjoc.20.188

• diketone 1b, bearing the less electron-withdrawing 1,3,4-oxadiazole moiety (σm/σp 0.335/0.443), with alkylamines proceeded well (73–74% yields), but required the addition of CHCl3 as co-solvent due to the low solubility of the starting 1,3-diketone 1b. On the other hand, the reaction of 1,3-diketone 1b

• with aniline resulted in low conversion of 1b even at prolonged reaction times (up to 10 days). The addition of molecular sieves, excess aniline, or acid catalysts did not significantly affect the conversion (Scheme 3). 1,3-Diketones with benzothiazole (1c, σm/σp 0.338/0.390) and oxazole (1d, σm/σp

• 0.267/0.305) substituents reacted with primary and secondary alkylamines, requiring prolonged heating and a 1.5 excess of amine (Scheme 4), to give meta-substituted arylamines in reasonable synthetic yields. In the case of 1,3-diketone 1d, the addition of molecular sieves is necessary in order to reduce

Natural resorcylic lactones derived from alternariol

• Joachim Podlech

Beilstein J. Org. Chem. 2024, 20, 2171–2207, doi:10.3762/bjoc.20.187

Novel truxene-based dipyrromethanes (DPMs): synthesis, spectroscopic characterization and photophysical properties

• Shakeel Alvi and
• Rashid Ali

Beilstein J. Org. Chem. 2024, 20, 2163–2170, doi:10.3762/bjoc.20.186

• -planar having π‐conjugation [2][3][4]. Remarkably, these unique characteristics of the truxene scaffold, results in strong π–π stacking ability in addition to the strong electron‐donating capability – hinting for the truxene’s capability as a worthy building block in the advancement of cutting-edge

• in addition to the stimulating photophysical properties and distinct architectures emerging from the self-assembly processes [42]. Noticeably, most extensively used DPMs belong to the 4,4-difluoro-4-bora-3a,4a-diaza-s-indacene (BODIPY), owing to their high propensity toward chemical manipulations and

• prepared compounds. The anion sensing/binding studies of these DPMs in addition to their formylated derivatives is under progress in our laboratory and will be published in due course. As mention above truxene and its congeners have shown a plethora of uses in diverse fields. To our best knowledge, their

Finding the most potent compounds using active learning on molecular pairs

• Zachary Fralish and
• Daniel Reker

Beilstein J. Org. Chem. 2024, 20, 2152–2162, doi:10.3762/bjoc.20.185

• combinatorial expansion of training data (Supporting Information File 1, Figure S3), these extra datapoints benefit the deep models’ abilities to learn the underlying structure–activity relationships more accurately and readily identify the most potent compounds of interest with novel scaffolds. In addition, as

O,S,Se-containing Biginelli products based on cyclic β-ketosulfone and their postfunctionalization

• Kateryna V. Dil and
• Vitalii A. Palchykov

Beilstein J. Org. Chem. 2024, 20, 2143–2151, doi:10.3762/bjoc.20.184

• amides, coumarins, alicyclic ketones, β-ketophosphonates, α-nitroketones, curcumin, and barbituric acid derivatives [1][2][8][9]. We analyzed a number of Biginelli-type products and publications and concluded that Se-containing DHPMs among the rarest examples and, in addition to this, ketosulfones have

• with up to 95% yield. The use of selenourea has been shown to give low yields of products (up to 33%). In fact, we have thus expanded the range of available selenium-containing DHPMs in addition to the work of other authors [33][34][35]. We also attempted to replace urea/thiourea/selenourea with N

• online software ProTox 3.0 for computational toxicity assessment of the products as their LD50 values. The tested compounds mainly belong to the 4th class of acute oral toxicity with 300 < LD50 ≤ 2000 mg/kg. In addition, we used MolPredictX (https://www.molpredictx.ufpb.br) [46] to evaluate potential

Factors influencing the performance of organocatalysts immobilised on solid supports: A review

• Zsuzsanna Fehér,
• Dóra Richter,
• Gyula Dargó and
• József Kupai

Beilstein J. Org. Chem. 2024, 20, 2129–2142, doi:10.3762/bjoc.20.183

• , including the type of support, immobilisation techniques and the resulting interactions. In addition, the influence of these factors on catalytic activity, selectivity and recyclability is discussed, providing an insight into optimising the performance of immobilised organocatalysts for practical

• the corresponding native catalysts. In addition, inactivation due to degradation may also occur. For long-term use, consistently high yields (and selectivity) are required over repeated runs, as these are indicative of the robust nature of the catalyst system. A real challenge is to develop a

• spaces. The confinement of the heterogeneous version of cinchona amine and thiourea catalysts was reported, leading to improved enantioselectivity values in the Michael addition of nitromethane (5) to chalcone (6) through modification of the pore size of mesoporous silica 8 or 9 (Scheme 2) [63]. Thus

Efficacy of radical reactions of isocyanides with heteroatom radicals in organic synthesis

• Akiya Ogawa and
• Yuki Yamamoto

Beilstein J. Org. Chem. 2024, 20, 2114–2128, doi:10.3762/bjoc.20.182

• with a variety of heteroatoms. In this Perspective, we review the addition and cyclization reactions of heteroatom radicals with isocyanides and discuss the synthetic prospects of the reaction of isocyanides with heteroatom radicals. Keywords: aza-Bergman cyclization; heteroatom-mixed system; imidoyl

• radical; isocyanide; radical addition; radical cyclization; Introduction Carbon monoxide is a very important C1 resource in both synthetic and industrial chemistry and is not only capable of reacting with a variety of active species such as carbon cations, carbon anions, and carbon radicals (Figure 1

• ), but is also widely used in transition-metal-catalyzed carbonylation reactions [1][2]. However, carbon monoxide is a flammable gas with a wide explosive range, although colorless and odorless, and requires special care in handling due to its high toxicity. In addition, when carbon monoxide is used in a

From perfluoroalkyl aryl sulfoxides to ortho thioethers

• Yang Li,
• Guillaume Dagousset,
• Emmanuel Magnier and
• Bruce Pégot

Beilstein J. Org. Chem. 2024, 20, 2108–2113, doi:10.3762/bjoc.20.181

• ][16], anilines [17], carbonyls [18][19][20][21], propargyl/allylsilanes [22][23][24][25][26][27][28][29][30][31][32][33][34], ynamides [35][36][37], and alkyl nitriles [38][39][40], were found to be suitable for this process. Whereas the addition of fluorine atoms to molecules is a well-established

• -cyanoalkylation of benzoyl or ester group-substituted fluoroalkyl aryl sulfoxides with various alkyl nitriles in two steps [48]. The addition of a base in the second step easily enabled the [3,3]-rearrangement, allowing for the addition of two functional groups – the cyano group and difluoromethylthio group – to

Computational toolbox for the analysis of protein–glycan interactions

• Ferran Nieto-Fabregat,
• Maria Pia Lenza,
• Angela Marseglia,
• Cristina Di Carluccio,
• Antonio Molinaro,
• Alba Silipo and
• Roberta Marchetti

Beilstein J. Org. Chem. 2024, 20, 2084–2107, doi:10.3762/bjoc.20.180

• in bacteria, which are able to use most of the mammalian sugar units to construct their glycoconjugates but, in addition, can also use a wide variety of particular, and potentially endless, monosaccharides that are instead not present in eukaryotes (Figure 2). This huge diversity and complexity

Cage-like microstructures via sequential Ugi reactions in aqueous emulsions

• Rita S. Alqubelat,
• Yaroslava A. Menzorova and
• Maxim A. Mironov

Beilstein J. Org. Chem. 2024, 20, 2078–2083, doi:10.3762/bjoc.20.179

• of such structures opened up opportunities for the design of effective particle-based emulsifiers. The particles themselves consisted of 95–99% water. In addition, they did not completely cover the surface of the emulsion droplets. Therefore, the emulsifier consumption in terms of dry weight

• the emulsion droplets. We also discovered that chitosan could be replaced by another polyamine in this synthesis, for example, polyvinylamine. In addition, the cellulose could be replaced by another polymer with carboxy groups, such as pectin. Thus, the scope of this synthesis can be significantly

Multicomponent syntheses of pyrazoles via (3 + 2)-cyclocondensation and (3 + 2)-cycloaddition key steps

• Ignaz Betcke,
• Alissa C. Götzinger,
• Maryna M. Kornet and
• Thomas J. J. Müller

Beilstein J. Org. Chem. 2024, 20, 2024–2077, doi:10.3762/bjoc.20.178

• were overcome by the addition–cyclocondensation of α,β-unsaturated ketones. Embedding 1,3-dipolar cycloadditions into a one-pot process has additionally been developed for concise syntheses of pyrazoles. The MCR strategy also allows for concatenating classical condensation-based methodology with modern

• ][5][6]. For instance, pyrazoles serve as monoamine oxidase A and B inhibitors [7] and as COX-II inhibitors [8], making them valuable analgesics [9]. Furthermore, several blockbuster drugs, such as VIAGRA® [10], Celecoxib® [11], and Rimonabant [12], contain pyrazole cores. In addition, extensive

• , product 17a shows cytotoxic activity against Hep G2 hepatocellular carcinoma and MCF-7 breast carcinoma cell lines. The synthesis of 3,5-bis(arylamino)pyrazoles 21 involves the preparation of bisarylthioamides 22 via nucleophilic addition and double retro-Claisen condensation of isothiocyanates 19 and

Diastereoselective synthesis of highly substituted cyclohexanones and tetrahydrochromene-4-ones via conjugate addition of curcumins to arylidenemalonates

• Deepa Nair,
• Abhishek Tiwari,
• Banamali Laha and
• Irishi N. N. Namboothiri

Beilstein J. Org. Chem. 2024, 20, 2016–2023, doi:10.3762/bjoc.20.177

• double Michael addition of γ,δ-unsaturated-β-keto esters or Nazarov reagents with suitable acceptors such as nitroalkenes or alkylideneazalactones [7][8][9][10]. From the perspective of an active methylene containing organic moiety, curcumin and its analogs serve as inexpensive and readily available

• , curcumin showcases its Michael donor–acceptor ability in different ways, such as simple Michael addition, [4 + 2] annulation, Michael addition followed by cyclization or one-pot multicomponent reactions (MCR), etc. (Scheme 1) [25]. In 2011, our group reported the reactivity of curcumin as a Michael donor

• –acceptor with nitroalkenes, resulting in multi-substituted cyclohexanones through a cascade inter–intramolecular double Michael addition process with high diastereoselectivity [26][27]. Subsequently, the enantioselective versions of the above reaction and a similar diastereoselective cascade Michael

Harnessing the versatility of hydrazones through electrosynthetic oxidative transformations

• Aurélie Claraz

Beilstein J. Org. Chem. 2024, 20, 1988–2004, doi:10.3762/bjoc.20.175

• asymmetric preparation of chiral amines through the addition of nucleophilic partners [21][22] while the azaenamine character of some aldehyde-derived hydrazones has been demonstrated in the coupling with suitable electrophiles such as Michael acceptors [23][24]. Last but not least, the C=N bond of

• undergo deprotonation delivering the oxadiazole 24a. Alternatively, from 23b (R2 ≠ H), nucleophilic addition of methanol to oxycarbenium 26b yielded the oxadiazoline 24b (Scheme 6) [41][42]. In 2020, Lei, Zhang and Gao et al. described the electrooxidative cyclization of in situ-generated α-keto acid

• the electrolysis was a four-electron oxidative process. Based on this study, the authors proposed the initial anodic oxidation of hydrazone 44 through the loss of two electrons and one proton to form cation 47. Subsequent nucleophilic addition of the azaarene led to new highly acidic cationic species