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Search for "X-ray crystallography" in Full Text gives 306 result(s) in Beilstein Journal of Organic Chemistry. Showing first 200.

Supramolecular assembly of hypervalent iodine macrocycles and alkali metals

  • Krishna Pandey,
  • Lucas X. Orton,
  • Grayson Venus,
  • Waseem A. Hussain,
  • Toby Woods,
  • Lichang Wang and
  • Kyle N. Plunkett

Beilstein J. Org. Chem. 2025, 21, 1095–1103, doi:10.3762/bjoc.21.87

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  • NaBArF24. Supporting Information Supporting Information File 29: Detailed experimental procedures, NMR spectra, and X-ray crystallography details. Supporting Information File 30: Crystallographic Information Files for 1/LiBArF20 and 1/NaBArF24. Funding We thank the National Science Foundation (#2003654
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Published 30 May 2025

Recent total synthesis of natural products leveraging a strategy of enamide cyclization

  • Chun-Yu Mi,
  • Jia-Yuan Zhai and
  • Xiao-Ming Zhang

Beilstein J. Org. Chem. 2025, 21, 999–1009, doi:10.3762/bjoc.21.81

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  • cyclization to form products in high yields and excellent enantioselectivities. Notably, only a single diastereomer was produced in each case. The single-crystal X-ray crystallography revealed a cis-configuration for both the alkene and ketone substituents on the enamide, indicating that the intramolecular
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Published 22 May 2025

Data accessibility in the chemical sciences: an analysis of recent practice in organic chemistry journals

  • Sally Bloodworth,
  • Cerys Willoughby and
  • Simon J. Coles

Beilstein J. Org. Chem. 2025, 21, 864–876, doi:10.3762/bjoc.21.70

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  • ., b.p., elemental analysis, optical rotation), thermochemical data, computational data, structure information, cell culture and bioassay data; and excludes X-ray crystallography. ‘NMR’ refers to those examples where a distinct policy for NMR spectroscopic data is available, in addition to the ‘All data
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Published 02 May 2025

Acyclic cucurbit[n]uril bearing alkyl sulfate ionic groups

  • Christian Akakpo,
  • Peter Y. Zavalij and
  • Lyle Isaacs

Beilstein J. Org. Chem. 2025, 21, 717–726, doi:10.3762/bjoc.21.55

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  • specific guest. C1 binds more tightly to quaternary ammonium guests compared to the corresponding primary ammonium ions. Keywords: cucurbituril; host–guest chemistry; isothermal titration calorimetry; molecular container; X-ray crystallography; Introduction Molecular recognition interactions are key
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Published 03 Apr 2025

Origami with small molecules: exploiting the C–F bond as a conformational tool

  • Patrick Ryan,
  • Ramsha Iftikhar and
  • Luke Hunter

Beilstein J. Org. Chem. 2025, 21, 680–716, doi:10.3762/bjoc.21.54

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Published 02 Apr 2025

Deep-blue emitting 9,10-bis(perfluorobenzyl)anthracene

  • Long K. San,
  • Sebastian Balser,
  • Brian J. Reeves,
  • Tyler T. Clikeman,
  • Yu-Sheng Chen,
  • Steven H. Strauss and
  • Olga V. Boltalina

Beilstein J. Org. Chem. 2025, 21, 515–525, doi:10.3762/bjoc.21.39

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  • concentrations used for ANTH, 9,10-ANTH(BnF)2, and quinine sulfate were 1.89, 1.14, and 1.94 (10−5 M), respectively. Relative quantum yields were calculated using the following equation referenced to quinine sulfate (Φf = 0.55 in 0.1 M H2SO4): X-ray crystallography The diffraction-quality single crystals of 9
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Published 07 Mar 2025

Unprecedented visible light-initiated topochemical [2 + 2] cycloaddition in a functionalized bimane dye

  • Metodej Dvoracek,
  • Brendan Twamley,
  • Mathias O. Senge and
  • Mikhail A. Filatov

Beilstein J. Org. Chem. 2025, 21, 500–509, doi:10.3762/bjoc.21.37

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  • promising strategy for synthesizing substituted cyclobutanes without the need for ultraviolet irradiation. Keywords: bimane; [2 + 2] cycloaddition; fluorescence; topochemical polymerization; X-ray crystallography; Introduction Topochemical polymerizations refer to polymerization reactions occurring in the
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Published 05 Mar 2025

Electrochemical synthesis of cyclic biaryl λ3-bromanes from 2,2’-dibromobiphenyls

  • Andrejs Savkins and
  • Igors Sokolovs

Beilstein J. Org. Chem. 2025, 21, 451–457, doi:10.3762/bjoc.21.32

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  • extractive workup followed by reversed-phase chromatography and its structure was unambiguously confirmed by X-ray crystallography (Table 1, graphic). Gratifyingly, a two-fold increase in the yield was achieved by a slight reduction of the current density to j = 8 mA·cm−2 (entry 2 vs entry 1 in Table 1). A
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Published 27 Feb 2025

The effect of neighbouring group participation and possible long range remote group participation in O-glycosylation

  • Rituparna Das and
  • Balaram Mukhopadhyay

Beilstein J. Org. Chem. 2025, 21, 369–406, doi:10.3762/bjoc.21.27

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Published 17 Feb 2025

Synthesis and characterizations of highly luminescent 5-isopropoxybenzo[rst]pentaphene

  • Islam S. Marae,
  • Jingyun Tan,
  • Rengo Yoshioka,
  • Zakaria Ziadi,
  • Eugene Khaskin,
  • Serhii Vasylevskyi,
  • Ryota Kabe,
  • Xiushang Xu and
  • Akimitsu Narita

Beilstein J. Org. Chem. 2025, 21, 270–276, doi:10.3762/bjoc.21.19

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  • literature. During our attempt to scale up the preparation of BPP 2 through the "DPEX" reaction, we unexpectedly obtained a 5-isopropoxy-substituted derivative of BPP (BPP-OiPr 3) (Scheme 1), whose structure was proven by NMR, mass spectrometry, and X-ray crystallography. In this work, we optimized the
  • BPP 2 and BPP-OiPr 3. Supporting Information Supporting Information File 114: Experimental and computational details, X-ray crystallography, synthesis and characterization of new compounds, additional PL, mass, and NMR spectra, and theoretical calculations. Acknowledgements We appreciate the help
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Published 04 Feb 2025

Streamlined modular synthesis of saframycin substructure via copper-catalyzed three-component assembly and gold-promoted 6-endo cyclization

  • Asahi Kanno,
  • Ryo Tanifuji,
  • Satoshi Yoshida,
  • Sota Sato,
  • Saori Maki-Yonekura,
  • Kiyofumi Takaba,
  • Jungmin Kang,
  • Kensuke Tono,
  • Koji Yonekura and
  • Hiroki Oguri

Beilstein J. Org. Chem. 2025, 21, 226–233, doi:10.3762/bjoc.21.14

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  • structure of 16 was confirmed by serial X-ray crystallography using an X-ray free-electron laser (XFEL) [deposition number CCDC 2352718) [54][55]. We then performed a Strecker-type reaction on the aldehyde 16 to construct an α-aminonitrile 17. To our delight, the key intermediate, 2,3-diaminobenzofuran 11
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Published 28 Jan 2025

Synthesis, structure and π-expansion of tris(4,5-dehydro-2,3:6,7-dibenzotropone)

  • Yongming Xiong,
  • Xue Lin Ma,
  • Shilong Su and
  • Qian Miao

Beilstein J. Org. Chem. 2025, 21, 1–7, doi:10.3762/bjoc.21.1

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  • analysis of it with X-ray crystallography. Interestingly, it is observed that tris(4,5-dehydro-2,3:6,7-dibenzotropone) crystallized from its solution in hexane resulting in colorless and yellow crystal polymorphs, where it adopts conformations of approximate Cs and C2 symmetry, respectively. Furthermore
  •  1) featuring three heptagons and two pentagons, with its structure confirmed by X-ray crystallography. This π-expansion approach of compound 1 differs from the method reported by Müllen and co-workers, which involves Ramirez olefination and Suzuki coupling, resulting in the expansion of a seven
  • Scholl reaction conditions. The structure of 3 was confirmed with single crystal X-ray crystallography, as detailed later. In addition, another product with a molecular ion peak of 1695.9115 in the high-resolution mass spectrum (Supporting Information File 1, Figure S6) was isolated in trace amounts
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Published 02 Jan 2025

Synthesis, characterization, and photophysical properties of novel 9‑phenyl-9-phosphafluorene oxide derivatives

  • Shuxian Qiu,
  • Duan Dong,
  • Jiahui Li,
  • Huiting Wen,
  • Jinpeng Li,
  • Yu Yang,
  • Shengxian Zhai and
  • Xingyuan Gao

Beilstein J. Org. Chem. 2024, 20, 3299–3305, doi:10.3762/bjoc.20.274

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  • fully elucidated by single-crystal X-ray crystallography, which was performed on a Bruker APEX-II CCD diffractometer using graphite monochromated Mo Kα radiation at a temperature of 296 ± 2 K. Crystallographic data were deposited with the Cambridge Crystallographic Data Centre under accession number
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Published 30 Dec 2024

Hypervalent iodine-mediated intramolecular alkene halocyclisation

  • Charu Bansal,
  • Oliver Ruggles,
  • Albert C. Rowett and
  • Alastair J. J. Lennox

Beilstein J. Org. Chem. 2024, 20, 3113–3133, doi:10.3762/bjoc.20.258

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  • excellent yields. The structures were also assigned by X-ray crystallography. Sulfur nucleophiles In 2015, Li and co-workers reported the synthesis of 5-bromomethyl-2-phenylthiazoline (79, Scheme 41) [48]. Sulfur was used as the internal nucleophile instead of nitrogen, as previously reported by the authors
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Published 28 Nov 2024

4,6-Diaryl-5,5-difluoro-1,3-dioxanes as chiral dopants for liquid crystal compositions

  • Maurice Médebielle,
  • Peer Kirsch,
  • Jérémy Merad,
  • Carolina von Essen,
  • Clemens Kühn and
  • Andreas Ruhl

Beilstein J. Org. Chem. 2024, 20, 2940–2945, doi:10.3762/bjoc.20.246

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  • polar mixture Host 2 it is twice as high as for less polar Host 1. Selected examples of chiral dopants with high HTPs in their nematic host LC mixture. Configuration of (R,R)-3 determined by X-ray crystallography. Configuration of (R,R)-4 determined by X-ray crystallography. Structure–property
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Published 14 Nov 2024

Structure and thermal stability of phosphorus-iodonium ylids

  • Andrew Greener,
  • Stephen P. Argent,
  • Coby J. Clarke and
  • Miriam L. O’Duill

Beilstein J. Org. Chem. 2024, 20, 2931–2939, doi:10.3762/bjoc.20.245

Graphical Abstract
  • to fully understand the electronic effect of the arene substituent. Conclusion A systematic investigation of phosphorus-iodonium ylids was carried out, correlating structural data from X-ray crystallography with thermal stability data from DSC and TGA measurements. A common decomposition mechanism
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Published 14 Nov 2024

C–C Coupling in sterically demanding porphyrin environments

  • Liam Cribbin,
  • Brendan Twamley,
  • Nicolae Buga,
  • John E. O’ Brien,
  • Raphael Bühler,
  • Roland A. Fischer and
  • Mathias O. Senge

Beilstein J. Org. Chem. 2024, 20, 2784–2798, doi:10.3762/bjoc.20.234

Graphical Abstract
  • porphyrins appended with boronic ester groups to be structurally disseminated by X-ray crystallography [62][63]. Compound 46 was found to crystallize in a 1:1 ratio with bis(pinacolato)diboron, with a void size of 8–9 Å. The formation of channel-type lattice structures is thermodynamically unfavorable, when
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Published 04 Nov 2024

Applications of microscopy and small angle scattering techniques for the characterisation of supramolecular gels

  • Connor R. M. MacDonald and
  • Emily R. Draper

Beilstein J. Org. Chem. 2024, 20, 2608–2634, doi:10.3762/bjoc.20.220

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Published 16 Oct 2024

Evaluating the halogen bonding strength of a iodoloisoxazolium(III) salt

  • Dominik L. Reinhard,
  • Anna Schmidt,
  • Marc Sons,
  • Julian Wolf,
  • Elric Engelage and
  • Stefan M. Huber

Beilstein J. Org. Chem. 2024, 20, 2401–2407, doi:10.3762/bjoc.20.204

Graphical Abstract
  • donors in recent years. Herein, a new structural motif for this compound class was developed: iodoloisoxazolium salts, bearing a cyclic five-membered iodolium core fused with an isoxazole ring. A derivative of this class was synthesized and investigated in the solid state by X-ray crystallography
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Published 23 Sep 2024

Asymmetric organocatalytic synthesis of chiral homoallylic amines

  • Nikolay S. Kondratyev and
  • Andrei V. Malkov

Beilstein J. Org. Chem. 2024, 20, 2349–2377, doi:10.3762/bjoc.20.201

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  • enantioselectivities were in the range of 82–97% and were lowest for the prenylation, and highest for Z-geranylboronic acid. The absolute configurations of the products were established by X-ray crystallography of the hydrochloride salts of the corresponding bromoindole and bromodihydroisoquinoline derivatives 20 and
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Published 16 Sep 2024

Synthesis and reactivity of the di(9-anthryl)methyl radical

  • Tomohiko Nishiuchi,
  • Kazuma Takahashi,
  • Yuta Makihara and
  • Takashi Kubo

Beilstein J. Org. Chem. 2024, 20, 2254–2260, doi:10.3762/bjoc.20.193

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  • , Supporting Information File 1). ESR and MS measurements as well as X-ray crystallography revealed that the radical species was assigned 10-mesityl-9-anthroyxyl radical (5), obtained in 47% yield (Figure 4c, Figure S8, Supporting Information File 1). Thus, two decomposition pathways were considered: a minor
  • . Decomposition pathway of the DAntM radical under air conditions. Supporting Information Supporting Information File 81: Synthetic procedure and compound characterization data (1H, 13C NMR, MS, melting point, X-ray crystallography) of new compounds. DFT calculation results and optimized structural Cartesian
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Published 05 Sep 2024

Computational toolbox for the analysis of protein–glycan interactions

  • Ferran Nieto-Fabregat,
  • Maria Pia Lenza,
  • Angela Marseglia,
  • Cristina Di Carluccio,
  • Antonio Molinaro,
  • Alba Silipo and
  • Roberta Marchetti

Beilstein J. Org. Chem. 2024, 20, 2084–2107, doi:10.3762/bjoc.20.180

Graphical Abstract
  • needed to deeply investigate the multifaceted aspects of protein–glycan interactions. To date, advanced and versatile NMR, X-ray crystallography, and MS methods [36][37][38] above all, have been developed to reach extensive information on the structural and conformational features of glycans and proteins
  • . Several experimental techniques, including NMR, X-ray crystallography and Cryo-EM, can provide critical information for the characterisation of protein structure and conformation. Their widespread and wisely use permitted to experimentally determine the structures of around 200,000 proteins [78], all
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Published 22 Aug 2024

Regioselective alkylation of a versatile indazole: Electrophile scope and mechanistic insights from density functional theory calculations

  • Pengcheng Lu,
  • Luis Juarez,
  • Paul A. Wiget,
  • Weihe Zhang,
  • Krishnan Raman and
  • Pravin L. Kotian

Beilstein J. Org. Chem. 2024, 20, 1940–1954, doi:10.3762/bjoc.20.170

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  • Scheme 1 compound 6 was treated with isopropyl iodide (7) in DMF in the presence of sodium hydride to provide products 8 and 9 in 38% and 46% yields, respectively. The structures of both compounds were unambiguously assigned using X-ray crystallography and 1H and nuclear Overhauser effect (NOE) NMR
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Published 09 Aug 2024

Oxidative fluorination with Selectfluor: A convenient procedure for preparing hypervalent iodine(V) fluorides

  • Samuel M. G. Dearman,
  • Xiang Li,
  • Yang Li,
  • Kuldip Singh and
  • Alison M. Stuart

Beilstein J. Org. Chem. 2024, 20, 1785–1793, doi:10.3762/bjoc.20.157

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  • (1–3 % spectroscopic yield) when BF3·OEt2 was added to the reaction mixture. X-ray crystallography and DFT calculations The solid-state structure of difluoroiodane 6 is shown in Figure 2 and displays the expected square pyramidal geometry around the iodine atom, with only minor distortion (τ5 = 0.191
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Published 29 Jul 2024

Synthesis and characterization of 1,2,3,4-naphthalene and anthracene diimides

  • Adam D. Bass,
  • Daniela Castellanos,
  • Xavier A. Calicdan and
  • Dennis D. Cao

Beilstein J. Org. Chem. 2024, 20, 1767–1772, doi:10.3762/bjoc.20.155

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  • cyclic imides. The solid-state structures of the N-phenyl derivatives, determined by X-ray crystallography, reveal changes in packing preference based on the number of aromatic rings in the core. The optical and electronic properties of the title compounds compare favorably with other previously
  • evaporation of CH2Cl2/MeOH solutions and characterized by X-ray crystallography. 7-Ph crystallizes in the Pbcn space group into a solvent superstructure of π-stacked columns of 7-Ph. The imide groups are pointed in alternating directions within a stack. While this may occur in part as a consequence of the
  • -Ph as determined by X-ray crystallography. Representative C=O···H–C and C–H···π interactions are indicated in teal and magenta, respectively. Top-down views of π-stacking modes in c) 7-Ph and d, e) 8-Ph. Hydrogen atoms have been removed for clarity in c–e. Atom color code: C = tan, H = white, Cl
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Published 25 Jul 2024
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