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Search for "scaffold" in Full Text gives 678 result(s) in Beilstein Journal of Organic Chemistry. Showing first 200.

Thiazolidinones: novel insights from microwave synthesis, computational studies, and potentially bioactive hybrids

  • Luan A. Martinho,
  • Victor H. J. G. Praciano,
  • Guilherme D. R. Matos,
  • Claudia C. Gatto and
  • Carlos Kleber Z. Andrade

Beilstein J. Org. Chem. 2025, 21, 2618–2636, doi:10.3762/bjoc.21.203

Graphical Abstract
  • , hybrid compounds combining the imidazo[1,2-a]pyridine scaffold with the thiazolidine nucleus were synthesized. Initially, aldehyde derivatives of the GBB adducts 8 were prepared from 2-aminopyridines 5, terephthalaldehyde (6), and isocyanides 7 using a green methodology that employed phosphotungstic acid
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Published 28 Nov 2025

Recent advances in total synthesis of illisimonin A

  • Juan Huang and
  • Ming Yang

Beilstein J. Org. Chem. 2025, 21, 2571–2583, doi:10.3762/bjoc.21.199

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  • embellished by additional bridging via a γ-lactone and a γ-lactol ring, resulting in a caged pentacyclic scaffold with a 5/5/5/5/5 ring arrangement. The compound demonstrates neuroprotective activity by mitigating oxygen-glucose deprivation-induced cell injury in SH-SY5Y cells. Since its isolation in 2017
  • strained trans-pentalene subunit. This carbon ring system is further bridged with a γ-lactone and a γ-lactol ring, forming a caged pentacyclic scaffold with a 5/5/5/5/5 ring arrangement. Illisimonin A was thus classified as an illisimonane-type Illicium sesquiterpene, and its carbon skeleton was designated
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Published 20 Nov 2025

Total syntheses of highly oxidative Ryania diterpenoids facilitated by innovations in synthetic strategies

  • Zhi-Qi Cao,
  • Jin-Bao Qiao and
  • Yu-Ming Zhao

Beilstein J. Org. Chem. 2025, 21, 2553–2570, doi:10.3762/bjoc.21.198

Graphical Abstract
  • the correct structure of ryanodol to be 3-epi-ryanodol (5), thereby revising the previously accepted configuration [15]. Since then, numerous analogs based on the ryanodol scaffold have been identified and characterized. As of now, 18 natural products from this family have been successfully isolated
  • core tricyclic carbon skeleton, and (2) systematic oxidation state manipulation of this scaffold to precisely introduce its dense array of oxygenated stereocenters. The construction of the C6 quaternary stereocenter represented a particularly formidable challenge in the late stage. This was
  • scaffold yet exhibit diverse oxidation patterns and stereochemical configurations, with ryanodine (1) representing a landmark example (Table 1). This review has highlighted synthetic investigations of Ryania diterpenoids by various research groups, encompassing brief discussions of their isolation
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Published 19 Nov 2025

Synthesis and characterization of a isothiouronium-calix[4]arene derivative: self-assembly and anticancer activity

  • Giuseppe Granata,
  • Loredana Ferreri,
  • Claudia Giovanna Leotta,
  • Giovanni Mario Pitari and
  • Grazia Maria Letizia Consoli

Beilstein J. Org. Chem. 2025, 21, 2535–2541, doi:10.3762/bjoc.21.195

Graphical Abstract
  • , and low toxicity make calixarene derivatives valuable drug candidates against cancer. The aim of the present study was the synthesis and characterization of a calix[4]arene derivative in which known anticancer isothiouronium groups were clustered on a calix[4]arene scaffold bearing long C12 alkyl
  • leukemia cells and low toxicity toward non-cancerous cells [43]. Therefore, the aim of this study was to evaluate whether introducing isothiouronium moieties at the upper rim of a calix[4]arene scaffold, bearing long C12 alkyl chains at the lower rim, could yield a novel derivative (compound 3) with
  • discriminate between normal and cancer cells, as demonstrated by the calculated SI of 0.47. The high SI value by compound 3 evidenced the isothiouronium moieties retain the selective cytotoxicity towards cancer cells also when tethered to the calixarene scaffold. Since the long alkyl chains in compound 3 could
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Published 14 Nov 2025

Isoorotamide-based peptide nucleic acid nucleobases with extended linkers aimed at distal base recognition of adenosine in double helical RNA

  • Grant D. Walby,
  • Brandon R. Tessier,
  • Tristan L. Mabee,
  • Jennah M. Hoke,
  • Hallie M. Bleam,
  • Angelina Giglio-Tos,
  • Emily E. Harding,
  • Vladislavs Baskevics,
  • Martins Katkevics,
  • Eriks Rozners and
  • James A. MacKay

Beilstein J. Org. Chem. 2025, 21, 2513–2523, doi:10.3762/bjoc.21.193

Graphical Abstract
  • functionalized. We noted that isoorotic acid offered an opportune core from which to prepare extended nucleobase monomers through amide bond formation (Figure 3a) [34]. Secondly, the work began with the initial goal to find an extended nucleobase scaffold capable of strong binding to A and then reverse its point
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Published 12 Nov 2025

Assembly strategy for thieno[3,2-b]thiophenes via a disulfide intermediate derived from 3-nitrothiophene-2,5-dicarboxylate

  • Roman A. Irgashev

Beilstein J. Org. Chem. 2025, 21, 2489–2497, doi:10.3762/bjoc.21.191

Graphical Abstract
  • as agonists of the GPR35 receptor [22], further underscoring the value of the TT scaffold in enzyme- and receptor-targeted drug discovery. Given the established practical significance of thieno[3,2-b]thiophene compounds, the construction of molecules featuring the TT core remains a key objective in
  • organic synthesis. A widely adopted strategy for building the TT scaffold involves the annulation of a second thiophene ring onto a suitably functionalized thiophene precursor. Most commonly, this approach starts from halogenated thiophenes such as 3-bromo- or 3-chlorothiophenes, which undergo subsequent
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Published 11 Nov 2025

Palladium-catalyzed regioselective C1-selective nitration of carbazoles

  • Vikash Kumar,
  • Jyothis Dharaniyedath,
  • Aiswarya T P,
  • Sk Ariyan,
  • Chitrothu Venkatesh and
  • Parthasarathy Gandeepan

Beilstein J. Org. Chem. 2025, 21, 2479–2488, doi:10.3762/bjoc.21.190

Graphical Abstract
  • ; palladium; Introduction Carbazole represents an important heterocyclic scaffold that is broadly present in many natural products, biologically active motifs, as well as optoelectronic and functional materials [1][2][3][4][5][6][7][8]. By virtue of its substantial application in various fields, significant
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Published 10 Nov 2025

Transformation of the cyclohexane ring to the cyclopentane fragment of biologically active compounds

  • Natalya Akhmetdinova,
  • Ilgiz Biktagirov and
  • Liliya Kh. Faizullina

Beilstein J. Org. Chem. 2025, 21, 2416–2446, doi:10.3762/bjoc.21.185

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  • 6,5,6-abeoabietane scaffold and impressive antitumor activity. α-Diazoketone 124 was synthesized from commercially available 1,2,4-trimethoxybenzene (123) [64] by a series of synthetic transformations, and converted by Wolff rearrangement to esters 125 and 126 with a trans-fused 6,5,6-ring system
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Published 06 Nov 2025

An Fe(II)-catalyzed synthesis of spiro[indoline-3,2'-pyrrolidine] derivatives

  • Elizaveta V. Gradova,
  • Nikita A. Ozhegov,
  • Roman O. Shcherbakov,
  • Alexander G. Tkachenko,
  • Larisa Y. Nesterova,
  • Elena Y. Mendogralo and
  • Maxim G. Uchuskin

Beilstein J. Org. Chem. 2025, 21, 2383–2388, doi:10.3762/bjoc.21.183

Graphical Abstract
  • bioactive molecules (Figure 1). This scaffold exhibits a broad range of pharmacological activities, including significant in vitro antimycobacterial properties [4], potent antitumor effects against melanoma cell lines [5], and antagonism of TH2 lymphocyte function [6]. Due to their wide-ranging biological
  • under heating furnished chiral spiroindolylpyrroles in excellent yields and enantioselectivity (Scheme 1, path d) [11]. Moreover, a copper-catalyzed reaction of oxindole-derived alkenes with acetophenone O-acetyl oxime has also been employed to construct the spiroindolylpyrrole scaffold (Scheme 1, path
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Published 05 Nov 2025

Synthetic study toward vibralactone

  • Liang Shi,
  • Jiayi Song,
  • Yiqing Li,
  • Jia-Chen Li,
  • Shuqi Li,
  • Li Ren,
  • Zhi-Yun Liu and
  • Hong-Dong Hao

Beilstein J. Org. Chem. 2025, 21, 2376–2382, doi:10.3762/bjoc.21.182

Graphical Abstract
  • this key intermediate in hand, β-hydroxy acid 29 was synthesized through deprotection, IBX oxidation, and Pinnick–Lindgren–Kraus oxidation and the β-lactone 13 was subsequently obtained through activation of the carboxylic acid. Although we successfully constructed the molecular scaffold of
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Published 04 Nov 2025

Recent advances in Norrish–Yang cyclization and dicarbonyl photoredox reactions for natural product synthesis

  • Peng-Xi Luo,
  • Jin-Xuan Yang,
  • Shao-Min Fu and
  • Bo Liu

Beilstein J. Org. Chem. 2025, 21, 2315–2333, doi:10.3762/bjoc.21.177

Graphical Abstract
  • ). Dysifragilone A (34) displays stronger inhibition of NO production than hydrocortisone, with an IC50 of 6.6 μM. Dysideanone B (35) shows cytotoxicity against HeLa and HepG2 human cancer cell lines, with IC50 values of 7.1 and 9.4 μM, respectively. Septosone B (37), featuring an unusual spiro[4.5]decane scaffold
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Published 30 Oct 2025

Halogenated butyrolactones from the biomass-derived synthon levoglucosenone

  • Johannes Puschnig,
  • Martyn Jevric and
  • Ben W. Greatrex

Beilstein J. Org. Chem. 2025, 21, 2297–2301, doi:10.3762/bjoc.21.175

Graphical Abstract
  • Baeyer–Villiger oxidation affording the fluorinated, chlorinated, and brominated dideoxyribonolactones. Keywords: butyrolactone; cyrene; fluorine; halogenation; levoglucosenone; Introduction The γ-butyrolactone ring is a privileged scaffold found in natural products and can be used as a valuable
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Published 29 Oct 2025

Pathway economy in cyclization of 1,n-enynes

  • Hezhen Han,
  • Wenjie Mao,
  • Bin Lin,
  • Maosheng Cheng,
  • Lu Yang and
  • Yongxiang Liu

Beilstein J. Org. Chem. 2025, 21, 2260–2282, doi:10.3762/bjoc.21.173

Graphical Abstract
  • under gold(I) catalysis through a substituent-controlled strategy (Scheme 8) [15]. Substrates with heteroaryl substituents underwent 6-endo-dig cyclization via gold-heteroatom coordination, furnishing the lactone-fused pyran scaffold 34 (Scheme 8, path a). Substrates with aryl substituents at the
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Published 27 Oct 2025

Synthesis of triazolo- and tetrazolo-fused 1,4-benzodiazepines via one-pot Ugi–azide and Cu-free click reactions

  • Xiaoming Ma,
  • Zijie Gao,
  • Jiawei Niu,
  • Wentao Shao,
  • Shenghu Yan,
  • Sai Zhang and
  • Wei Zhang

Beilstein J. Org. Chem. 2025, 21, 2202–2210, doi:10.3762/bjoc.21.167

Graphical Abstract
  • /bjoc.21.167 Abstract A one-pot Ugi–azide reaction followed by intramolecular Cu-free azide–alkyne cycloaddition generates a polycyclic scaffold 7 bearing polycyclic triazole, tetrazole, and benzodiazepine rings. This method could be extended for obtaining a more complicated scaffold 8 containing a
  • methods for the synthesis of tetrazoles [25][26][27][28], the Ugi–azide reaction is a good approach for constructing 1,5-disubstituted-tetrazoles (1,5-DS-T) [29][30][31]. This scaffold can be subsequently linked to 1,2,3-triazole [32], 4H-chromen-4-one [33], pyrrolo[3,4-b]indolizine [34], and other
  • in 36–90% yields (Scheme 4). As shown in Scheme 2, we also propose the synthesis of triazole-, tetrazole-, and piperazinone-fused 1,4-benzodiazepines 8. For the synthesis of this unique polycyclic scaffold, 2-isocyanoacetate 9 played a critical role in the formation of the piperazinone ring. Thus
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Published 17 Oct 2025

C2 to C6 biobased carbonyl platforms for fine chemistry

  • Jingjing Jiang,
  • Muhammad Noman Haider Tariq,
  • Florence Popowycz,
  • Yanlong Gu and
  • Yves Queneau

Beilstein J. Org. Chem. 2025, 21, 2103–2172, doi:10.3762/bjoc.21.165

Graphical Abstract
  • benzo[a]carbazole (a very important scaffold in the pharmaceutical industry) from the commercially available 2-phenylindole and bio-renewable 1-hydroxypropan-2-one (acetol) using a sulfone-containing Brønsted acidic medium as catalyst. The process was applied to a number of substituted 2-phenylindoles
  • hydrolysis (Scheme 59). Furfural was employed as starting scaffold in a protocol developed to form acetals as fuel additives. The acyclic acetal is generated in situ from crude furfural with propanol in dimethyl carbonate using a nanoporous aluminosilicate material Al-13-(3.18) as catalyst, and then
  • versatile scaffold for bioactive molecules) with up to 99% yield and 96% ee were prepared (Scheme 69). The large electron-donating groups of 3,5-di-tert-butyl-4-methoxyphenyl (DTBM) improved the activities of the CuI–thiophene-2-carboxylate catalyst (CuTc) while the use of (R)-DTBM-GarPhos as the chiral
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Published 15 Oct 2025

Discovery of cytotoxic indolo[1,2-c]quinazoline derivatives through scaffold-based design

  • Daniil V. Khabarov,
  • Valeria A. Litvinova,
  • Lyubov G. Dezhenkova,
  • Dmitry N. Kaluzhny,
  • Alexander S. Tikhomirov and
  • Andrey E. Shchekotikhin

Beilstein J. Org. Chem. 2025, 21, 2062–2071, doi:10.3762/bjoc.21.161

Graphical Abstract
  • polycyclic structures, DNA was not the primary target for their antiproliferative effects, as confirmed by FID assay and fluorescence titration studies. This study represents the first comprehensive evaluation of indolo[1,2-c]quinazolines as potential scaffold for the development of antitumor agents
  • reports that focused on natural alkaloids or limited antimicrobial studies, this study expands the pharmacological scope by demonstrating selective antiproliferative effects and identifying promising SAR trends. The originality of the research lies in linking strategic scaffold functionalization
  • exceptional potential as ligands targeting secondary structures of nucleic acids, particularly G-quadruplexes (G4) [21][22]. The indolo[1,2-c]quinazolin-6(5H)-one scaffold 1 exemplifies this design principle, with its rigid polycyclic framework mimicking topologies of established DNA/RNA-interactive molecules
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Published 13 Oct 2025

Asymmetric total synthesis of tricyclic prostaglandin D2 metabolite methyl ester via oxidative radical cyclization

  • Miao Xiao,
  • Liuyang Pu,
  • Qiaoli Shang,
  • Lei Zhu and
  • Jun Huang

Beilstein J. Org. Chem. 2025, 21, 1964–1972, doi:10.3762/bjoc.21.152

Graphical Abstract
  • effective tool in clinical applications [6]. However, the scarcity of metabolite 4 has prevented it from being used more widely, and thus synthesis methods for 4 are required. Compound 4 contains a cyclopentanol scaffold with stereogenicity at C8, C9, C11, and C12 (Scheme 1A). In addition, 4 is
  • by the anomeric effect [23] in the tricyclic scaffold. Compound 13 could be produced from olefin 14 via cross-metathesis. The regio- and diastereoselective connection of C8 and C12 in compound 14 could be realized through a transition-metal-mediated oxidative radical cyclization through TS-1 from β
  • nitrate (CAN) [29][30] and Fe(ClO4)3·9H2O [31], failed to afford desired product 14 (Table 1, entries 6 and 7). To explore the synthesis of fully functionalized tricyclic core scaffold 12, methods for incorporating the side chain at C14 and for the stereocontrolled introduction of the allyl moiety at C8
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Published 24 Sep 2025

Enantioselective desymmetrization strategy of prochiral 1,3-diols in natural product synthesis

  • Lihua Wei,
  • Rui Yang,
  • Zhifeng Shi and
  • Zhiqiang Ma

Beilstein J. Org. Chem. 2025, 21, 1932–1963, doi:10.3762/bjoc.21.151

Graphical Abstract
  • transformation involving acyl-group migration, [4 + 2] cycloaddition and aromatic Pummerer-type reaction, provided chiral spiro compound 59 with the 6/6/5/5/6/6 scaffold, and this intermediate was further elaborated to 60 in six additional steps. Lipases from Pseudomonas genus Pseudomonas is a genus of Gram
  • 226. Regioselective hydrolysis of 226 with TFA yielded a dihydropyran intermediate, which was benzylated to deliver 227. Desilylation of 227 gave diol 228, which underwent intramolecular Michael reaction to form bicyclic compound 230 as a single stereoisomer (87% yield over two steps). This scaffold
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Published 18 Sep 2025

Chiral phosphoric acid-catalyzed asymmetric synthesis of helically chiral, planarly chiral and inherently chiral molecules

  • Wei Liu and
  • Xiaoyu Yang

Beilstein J. Org. Chem. 2025, 21, 1864–1889, doi:10.3762/bjoc.21.145

Graphical Abstract
  • effects of the CPAs, which establish a chiral microenvironment within the chiral scaffold that governs the stereoselectivity of asymmetric reactions. Chiral molecules, characterized as three-dimensional structures that are nonsuperimposable with their mirror image, have significant applications in
  • terminal aromatic rings [17]. Despite lacking asymmetric stereogenic centers, this nonplanar scaffold exhibits intrinsic P/M chirality due to the helical arrangement of the π-extended skeleton. Renowned for their high thermal stability and structural rigidity, chiral helicenes have emerged as prominent
  • the 1,3-phenyl rings (see 53d) or 1,3-diamino substitution (see 53e) on the calix[4]arene scaffold were also amenable to this method, which yielded a series of structurally diverse novel quinoline-containing inherently chiral calix[4]arenes. Moreover, by using CPA 4 as the optimal catalyst, the
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Published 10 Sep 2025

Approaches to stereoselective 1,1'-glycosylation

  • Daniele Zucchetta and
  • Alla Zamyatina

Beilstein J. Org. Chem. 2025, 21, 1700–1718, doi:10.3762/bjoc.21.133

Graphical Abstract
  • functional and protecting groups on the pyranose scaffold can profoundly influence the reaction mechanism, toggling it between SN2 and SN1 pathways [104][105]. Supporting this, the torsional restriction imparted by the 4,6-O-benzylidene group in 2-azido-substituted GlcN lactols was found to favor the
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Published 27 Aug 2025

On the aromaticity and photophysics of 1-arylbenzo[a]imidazo[5,1,2-cd]indolizines as bicolor fluorescent molecules for barium tagging in the study of double-beta decay of 136Xe

  • Eric Iván Velazco-Cabral,
  • Fernando Auria-Luna,
  • Juan Molina-Canteras,
  • Miguel A. Vázquez,
  • Iván Rivilla and
  • Fernando P. Cossío

Beilstein J. Org. Chem. 2025, 21, 1627–1638, doi:10.3762/bjoc.21.126

Graphical Abstract
  • were performed by using the Gaussian 16 suite of programs [56]. Conclusion From the computational study reported in this paper, we conclude that the benzo[a]imidazo[5,1,2-cd]indolizine scaffold is a convenient fluorophore for barium tagging in neutrinoless double-beta decay. This fluorophore exhibits
  • scaffold. The chemical synthesis, photophysical properties and suitability for barium tagging will be published in due course. Two possible double beta decay modes. Left: with emission of two electronic antineutrinos (ββ2ν). Right: neutrinoless double beta decay (ββ0ν). General structure of first
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Published 13 Aug 2025

General method for the synthesis of enaminones via photocatalysis

  • Paula Pérez-Ramos,
  • Raquel G. Soengas and
  • Humberto Rodríguez-Solla

Beilstein J. Org. Chem. 2025, 21, 1535–1543, doi:10.3762/bjoc.21.116

Graphical Abstract
  • intermediates in the synthesis of several derivatives with important applications in medicinal chemistry. Furthermore, many marketed drugs feature the enaminone structural moiety. In this context, we have developed a photoredox and nickel catalytic system to rapidly forge the enaminone scaffold from 3
  • act as both electrophiles and nucleophiles [7]. This makes enaminones very reactive, providing an excellent scaffold for organic synthesis. Thus, enaminones are valuable building blocks in the preparation of several carbocyclic [8][9][10][11], heterocyclic [12][13][14][15][16][17][18] as well as
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Published 29 Jul 2025

Heterologous biosynthesis of cotylenol and concise synthesis of fusicoccane diterpenoids

  • Ye Yuan,
  • Zhenhua Guan,
  • Xue-Jie Zhang,
  • Nanyu Yao,
  • Wenling Yuan,
  • Yonghui Zhang,
  • Ying Ye and
  • Zheng Xiang

Beilstein J. Org. Chem. 2025, 21, 1489–1495, doi:10.3762/bjoc.21.111

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  • Nozaki–Hiyama–Kishi reaction and a one-pot Prins cyclization/transannular hydride transfer to construct the 5-8-5 tricyclic scaffold. Enzymatic oxidations were used to install the hydroxy group at the C-3 position. Ten fusicoccanes were synthesized in 8–13 steps each. Despite these efforts, a strategy
  • brassicicene biosynthesis-related gene cluster (BGC) in Alternaria brassicicola and Pseudocercospora fijiensis [34][35]. The 5-8-5 tricyclic scaffold is transformed into various fusicoccane natural products catalyzed by P450s, dioxygenases, dehydrogenases, and reductases. Therefore, we propose to harness the
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Published 21 Jul 2025

Advances in nitrogen-containing helicenes: synthesis, chiroptical properties, and optoelectronic applications

  • Meng Qiu,
  • Jing Du,
  • Nai-Te Yao,
  • Xin-Yue Wang and
  • Han-Yuan Gong

Beilstein J. Org. Chem. 2025, 21, 1422–1453, doi:10.3762/bjoc.21.106

Graphical Abstract
  • [fluorene-9,9'-xanthene]) scaffold, they successfully converted initially non-emissive helicenes into efficient TADF luminophores with tunable emission wavelengths ranging from sky-blue to deep red. Particularly, the enantiomeric forms of the 75b derivatives emerged as rare examples of red-emissive CPL
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Published 11 Jul 2025

N-Salicyl-amino acid derivatives with antiparasitic activity from Pseudomonas sp. UIAU-6B

  • Joy E. Rajakulendran,
  • Emmanuel Tope Oluwabusola,
  • Michela Cerone,
  • Terry K. Smith,
  • Olusoji O. Adebisi,
  • Adefolalu Adedotun,
  • Gagan Preet,
  • Sylvia Soldatou,
  • Hai Deng,
  • Rainer Ebel and
  • Marcel Jaspars

Beilstein J. Org. Chem. 2025, 21, 1388–1396, doi:10.3762/bjoc.21.103

Graphical Abstract
  • siderophores because the isolates share common structural scaffold and are analogues of previously confirmed siderophores, including pseudomonine and salicylic acid [26][27][28] which were also isolated from the same culture as well. The experimental work to confirm these types of compounds as siderophores was
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Published 04 Jul 2025
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