Deciphering the mechanism of γ-cyclodextrin’s hydrophobic cavity hydration: an integrated experimental and theoretical study

• Stiliyana Pereva,
• Stefan Dobrev,
• Tsveta Sarafska,
• Valya Nikolova,
• Silvia Angelova,
• Tony Spassov and
• Todor Dudev

Beilstein J. Org. Chem. 2024, 20, 2635–2643, doi:10.3762/bjoc.20.221

• intramolecular hydrogen bonds between themselves, with water molecules in aqueous solution, or with guest molecules that fit into host’s cavity [20]. The primary hydroxy groups in the nonhydrated γ-CD (located in the upper/narrow rim; O6 side of the truncated cone) can be coordinated (arranged) in two ways

• enlarging the aperture (“open” configuration). In the “open” configuration, the primary hydroxy groups are not involved in the intramolecular hydrogen-bonding interactions with neighboring OH groups. Relatively weak hydrogen bonds are formed between the secondary hydroxy groups at the wider/lower rim of the

• groups in intramolecular H-bonds is contradictory and confusing – observations suggest no involvement of secondary hydroxy protons in intramolecular H-bonds and strong exposure of OH-6 groups to the solvent [22]. Our calculations reveal (as expected) that the “closed” narrow-rim arrangement is

Base-promoted cascade recyclization of allomaltol derivatives containing an amide fragment into substituted 3-(1-hydroxyethylidene)tetronic acids

• Andrey N. Komogortsev,
• Constantine V. Milyutin and
• Boris V. Lichitsky

Beilstein J. Org. Chem. 2024, 20, 2585–2591, doi:10.3762/bjoc.20.217

• -hydroxypyran-4-ones with hydrazine are known [30][31]. At the same time all considered recyclizations proceed under action of additional components and the intramolecular variant of this reaction is not described in the literature. It can be supposed that in the case of a substrate containing an allomaltol

• was isolated in unchanged form. It should be mentioned that the key step of the studied recyclization is an intramolecular nucleophilic addition of a nitrogen atom at the double bond of the pyranone ring. Comparing the chemical properties of the considered amides and hydrazides it can be assumed that

• formation of an intramolecular hydrogen bond and the double bond is located in the furanone ring. In contrast to the aforementioned example the considered compounds 4 have an exocyclic enol fragment and the intramolecular hydrogen bond is connected to the carbonyl oxygen atom. Thus, the absence of

A review of recent advances in electrochemical and photoelectrochemical late-stage functionalization classified by anodic oxidation, cathodic reduction, and paired electrolysis

• Nian Li,
• Ruzal Sitdikov,
• Ajit Prabhakar Kale,
• Joost Steverlynck,
• Bo Li and
• Magnus Rueping

Beilstein J. Org. Chem. 2024, 20, 2500–2566, doi:10.3762/bjoc.20.214

• cross-coupling between these two intermediates, followed by intramolecular cyclization and subsequent deprotonation results in the desired product (Scheme 20). Furthermore, Budny and coworkers demonstrated that (±)-triticonazole and related compounds could be cyclized and alkoxylated to the

• that dimerize to form iodine (I2). Subsequent anodic oxidation of in-situ formed Et3N produced an α-amino radical. The iodine then reacts with the alkene to form an iodonium intermediate, which undergoes intramolecular cyclization with losing an electron, and a second water attack to yield the desired

• benzylic position (Scheme 31). 1.3.2 Co-assisted anodic oxidation. In 2021, Xu and colleagues developed an electrocatalytic approach for the intramolecular oxidative allylic amination and C–H alkylation using cobalt–salen complexes as catalysts [43]. In this reaction, the cobalt catalyst [Co(II)] is first

Photoredox-catalyzed intramolecular nucleophilic amidation of alkenes with β-lactams

• Valentina Giraldi,
• Giandomenico Magagnano,
• Daria Giacomini,
• Pier Giorgio Cozzi and
• Andrea Gualandi

Beilstein J. Org. Chem. 2024, 20, 2461–2468, doi:10.3762/bjoc.20.210

• reactions limit the utility of this approach. Herein, we report an intramolecular photoredox cyclization of alkenes with β-lactams in the presence of an acridinium photocatalyst. The approach uses an intramolecular nucleophilic addition of the β-lactam nitrogen atom to the radical cation photogenerated in

• the linked alkene moiety, followed by hydrogen transfer from the hydrogen atom transfer (HAT) catalyst. This process was used to successfully prepare 2-alkylated clavam derivatives. Keywords: β-lactam; acridinium photocatalyst; alkenes; amides; intramolecular radical reaction; photoredox catalysis

• intramolecular nucleophilic attack induced by photocatalytic oxidation was reported by Yoon et al. with tosylamide derivatives [29]. Specifically, amides were employed in a photoredox cyclization process using a strong photooxidative acridinium catalyst such as the Fukuzumi catalyst (I, Figure 1B) [30][31

Hypervalent iodine-mediated cyclization of bishomoallylamides to prolinols

• Smaher E. Butt,
• Konrad Kepski,
• Jean-Marc Sotiropoulos and
• Wesley J. Moran

Beilstein J. Org. Chem. 2024, 20, 2455–2460, doi:10.3762/bjoc.20.209

• , the iodane moiety in 12 is eliminated by an intramolecular attack by the amide nitrogen to form the aziridinium 13. Finally, ring-opening by SN2 attack of trifluoroacetate leads to the final product 14 [20]. In this case, the kinetic pyrrolidine product is obtained due to the electron-withdrawing

Synthesis and conformational analysis of pyran inter-halide analogues of ᴅ-talose

• Olivier Lessard,
• Mathilde Grosset-Magagne,
• Paul A. Johnson and
• Denis Giguère

Beilstein J. Org. Chem. 2024, 20, 2442–2454, doi:10.3762/bjoc.20.208

• , intramolecular F2···F3, F2···X4, and F3···X4 contacts are smaller than the sum of the Van der Walls radii [49]. Taking together, all these data clearly demonstrate that the nature of one halogen can have an impact on the solid-state conformation of halogenated pyrans. We also evaluated the Cremer–Pople ring

• for the halogens. Selected bond distances for compounds 13–15, 17, and 18. Selected bond angles for compounds 13–15, 17, and 18. Selected torsion angles for compounds 13–15, 17, and 18. 1,3-Diaxial repulsion between C2–F and C4–X bonds for 13–15 and 17.a Key interatomic distances (intramolecular) for

Facile preparation of fluorine-containing 2,3-epoxypropanoates and their epoxy ring-opening reactions with various nucleophiles

• Yutaro Miyashita,
• Sae Someya,
• Tomoko Kawasaki-Takasuka,
• Tomohiro Agou and
• Takashi Yamazaki

Beilstein J. Org. Chem. 2024, 20, 2421–2433, doi:10.3762/bjoc.20.206

• intramolecular interaction between fluorine and metals would also facilitate the smooth progress of these reactions. Such high potential of 1a allowed us to apply it to nucleophilic epoxidation because the resultant epoxyester 2a is recognized as an intriguing building block (Scheme 1). Another expectation to 2a

• nonfluorinated Rf groups which sometimes suffered from the contamination of the regioisomers as a consequence of the regiorandom attack of nucleophiles [22][23][24][25][26]. Despite such significant advantage, compound 2a was previously prepared only by 1) the LDA-mediated iodination-intramolecular ring closure

• was confirmed as 2,3-anti-3,4-syn by its X-ray crystallographic analysis [49] (Figure 2) whose construction could be readily understood as the result of a highly stereoselective SN2-type epoxy ring opening of 2a, followed by the intramolecular lactone formation with the pro-R ethoxycarbonyl group

Synthesis, electrochemical properties, and antioxidant activity of sterically hindered catechols with 1,3,4-oxadiazole, 1,2,4-triazole, thiazole or pyridine fragments

• Daria A. Burmistrova,
• Andrey Galustyan,
• Nadezhda P. Pomortseva,
• Kristina D. Pashaeva,
• Maxim V. Arsenyev,
• Oleg P. Demidov,
• Mikhail A. Kiskin,
• Andrey I. Poddel’sky,
• Nadezhda T. Berberova and
• Ivan V. Smolyaninov

Beilstein J. Org. Chem. 2024, 20, 2378–2391, doi:10.3762/bjoc.20.202

• of neighboring molecules [57][58][59][60][61]. The intra- and intermolecular interactions in crystals 5, 6·0.5CH3CN, and 8 lead to different complex structural motifs in crystals of these compounds. Two intramolecular hydrogen bonds (Figure 1) are observed in the crystal structure of 5: between OH

• neighbouring group O2–H2, and there is no intramolecular hydrogen bond between hydroxy groups in molecule 8 (Figure 2(b)). A π-stalking was found between the pyridine groups in molecules belonging to the neighbouring pairs with the corresponding distance of 3.45(1) Å. Electrochemical properties The study of

• changes. This is confirmed by the appearance of an absorption maximum in the UV–visible spectrum at λ = 490 nm, which is characteristic of thiolated o-benzoquinones. This absorption band corresponds to intramolecular charge transfer between the thioether group and the o-benzoquinone fragment [36][62][63

Asymmetric organocatalytic synthesis of chiral homoallylic amines

• Nikolay S. Kondratyev and
• Andrei V. Malkov

Beilstein J. Org. Chem. 2024, 20, 2349–2377, doi:10.3762/bjoc.20.201

• generated from Togni’s reagent (145) to a double bond of the δ-alkenylamine, followed by intramolecular hydrogen atom transfer and a single-electron oxidation of the intermediate alkyl radical to form an imine that is then reduced by hydrogen donor 147 catalysed by CPA (R)-VAPOL (148). The

Stereoselective mechanochemical synthesis of thiomalonate Michael adducts via iminium catalysis by chiral primary amines

• Michał Błauciak,
• Dominika Andrzejczyk,
• Błażej Dziuk and
• Rafał Kowalczyk

Beilstein J. Org. Chem. 2024, 20, 2313–2322, doi:10.3762/bjoc.20.198

• stabilized by an intramolecular hydrogen bond with a protonated amine unit activates the Michael acceptor (Scheme 4). Moreover, a strong but reversible covalent bond locates the electrophile upon the quinoline unit of the catalyst and thus subsequently blocks the bottom approach of the thiomalonate. Hence

Deuterated reagents in multicomponent reactions to afford deuterium-labeled products

• Kevin Schofield,
• Shayna Maddern,
• Yueteng Zhang,
• Grace E. Mastin,
• Rachel Knight,
• Wei Wang,
• James Galligan and
• Christopher Hulme

Beilstein J. Org. Chem. 2024, 20, 2270–2279, doi:10.3762/bjoc.20.195

• (Scheme 8) [47]. The Groebke–Blackburn–Bienaymé (GBB) reaction is an intramolecular variant of the Ugi reaction where the intermediate nitrilium ion is intercepted by heteroatoms from the amino-heterocyclic input. Discovered in 1998, and reported independently by three different research groups, it is a

Heterocycle-guided synthesis of m-hetarylanilines via three-component benzannulation

• Andrey R. Galeev,
• Maksim V. Dmitriev,
• Alexander S. Novikov and
• Andrey N. Maslivets

Beilstein J. Org. Chem. 2024, 20, 2208–2216, doi:10.3762/bjoc.20.188

• ring formation via benzannulative inter- or intramolecular condensation of acyclic precursors [27][32][33][34][35][36][37]. Within the latter strategy, [3 + 3] condensations are gaining much attention due to the availability of starting materials and the straightforward installation of the aryl(hetaryl

• intramolecular addition of enamine I to the C3=O to form intermediate II, which dehydrates to cyclic carbinol III. Finally, dehydration of intermediate III yields anilines 3. Conclusion In summary, a method for the synthesis of substituted meta-hetarylanilines under mild conditions starting from 1,3-diketones

Natural resorcylic lactones derived from alternariol

• Joachim Podlech

Beilstein J. Org. Chem. 2024, 20, 2171–2207, doi:10.3762/bjoc.20.187

Efficacy of radical reactions of isocyanides with heteroatom radicals in organic synthesis

• Akiya Ogawa and
• Yuki Yamamoto

Beilstein J. Org. Chem. 2024, 20, 2114–2128, doi:10.3762/bjoc.20.182

• imine 6’ (96%), which underwent [2 + 2] cycloaddition with methoxyketene to afford β-lactam derivative 7 (79%) (Scheme 4). Selective replacement of the PhSe group of 7 with a 3-butanonyl group (34%) and the subsequent intramolecular Horner–Emmons reaction successfully led to carbacephem skeleton 8 (96

• compounds to isocyanides using imidoyl radicals as key intermediates. However, as the number of substituents on typical elements increases, intermolecular 1,1-addition reactions become more difficult due to the increase in steric hindrance. Therefore, it is expected that intramolecular cyclization of

• imidoyl radicals will be possible by introducing an unsaturated group at an appropriate position in the isocyanide molecule, since intramolecular reactions are generally 103 times faster than intermolecular reactions. This chapter discusses the intramolecular radical cyclization reactions of isocyanides

Computational toolbox for the analysis of protein–glycan interactions

• Ferran Nieto-Fabregat,
• Maria Pia Lenza,
• Angela Marseglia,
• Cristina Di Carluccio,
• Antonio Molinaro,
• Alba Silipo and
• Roberta Marchetti

Beilstein J. Org. Chem. 2024, 20, 2084–2107, doi:10.3762/bjoc.20.180

• ) sample the glycan conformational space; ii) investigate how the glycan behaves in a solution (if the MD is performed in explicit solvent), describing carbohydrate–water interactions; iii) monitoring the intramolecular interactions. Usually, this information has to be further validated by performing

Multicomponent syntheses of pyrazoles via (3 + 2)-cyclocondensation and (3 + 2)-cycloaddition key steps

• Ignaz Betcke,
• Alissa C. Götzinger,
• Maryna M. Kornet and
• Thomas J. J. Müller

Beilstein J. Org. Chem. 2024, 20, 2024–2077, doi:10.3762/bjoc.20.178

• formate (Scheme 8) [58]. Upon reaction with β-ketoesters, hydrazone 30 is formed, which reacts via intramolecular Knoevenagel condensation to give the corresponding pyrazoles 27. The method tolerates β-ketoesters with alkyl substituents and various ketoamides. In addition, an example could be synthesized

Diastereoselective synthesis of highly substituted cyclohexanones and tetrahydrochromene-4-ones via conjugate addition of curcumins to arylidenemalonates

• Deepa Nair,
• Abhishek Tiwari,
• Banamali Laha and
• Irishi N. N. Namboothiri

Beilstein J. Org. Chem. 2024, 20, 2016–2023, doi:10.3762/bjoc.20.177

• Deepa Nair Abhishek Tiwari Banamali Laha Irishi N. N. Namboothiri Department of Chemistry, Indian Institute of Technology Bombay, Mumbai, 400 076, India 10.3762/bjoc.20.177 Abstract A cascade inter–intramolecular double Michael strategy for the synthesis of highly functionalized cyclohexanones

• –acceptor with nitroalkenes, resulting in multi-substituted cyclohexanones through a cascade inter–intramolecular double Michael addition process with high diastereoselectivity [26][27]. Subsequently, the enantioselective versions of the above reaction and a similar diastereoselective cascade Michael

• equilibrium with 1,3-dicarbonyl enolate I, but the former would be trapped via cyclization involving a diastereoselective 6-endo-trig intramolecular Michael addition to the enone moiety leading to highly substituted cyclohexanone 3. The formation of triple Michael adduct 4 can be attributed to the enolate 3

Harnessing the versatility of hydrazones through electrosynthetic oxidative transformations

• Aurélie Claraz

Beilstein J. Org. Chem. 2024, 20, 1988–2004, doi:10.3762/bjoc.20.175

• one, which is consistent with the finding of ketone side-product. In 2018, the group of Zhang established an intramolecular C(sp2)–H functionalization of aldehyde-derived N-(2-pyridinyl)hydrazones 15 to produce 1,2,4-triazolo[4,3-a]pyridines 16 (Scheme 4) [39]. Interestingly, the hydrazone was in situ

• applications in industry. Synthesis of triazolopyridinium salts [34][35][36]. Synthesis of pyrazoles [37]. Synthesis of indazoles from ketone-derived hydrazones [38]. Intramolecular C(sp2)–H functionalization of aldehyde-derived N-(2-pyridinyl)hydrazones for the synthesis of 1,2,4-triazolo[4,3-a]pyridines [39

Development of a flow photochemical process for a π-Lewis acidic metal-catalyzed cyclization/radical addition sequence: in situ-generated 2-benzopyrylium as photoredox catalyst and reactive intermediate

• Masahiro Terada,
• Zen Iwasaki,
• Ryohei Yazaki,
• Shigenobu Umemiya and
• Jun Kikuchi

Beilstein J. Org. Chem. 2024, 20, 1973–1980, doi:10.3762/bjoc.20.173

• generated in the flow reaction system through the intramolecular cyclization of ortho-carbonyl alkynylbenzene derivatives by the π-Lewis acidic metal catalyst AgNTf2 and the subsequent proto-demetalation with trifluoroacetic acid. The 2-benzopyrylium intermediates underwent further photoreactions with

• intramolecular cyclization followed by proto-demetalation with trifluoroacetic acid (TFA). In catalytic cycle II, photoexcitation of the generated 2-benzopyrylium intermediates A under light irradiation facilitates single-electron transfer (SET) from benzyltrimethylsilane derivatives 2 as the donor molecule

• intramolecular cyclization of ortho-carbonyl alkynylbenzene derivatives and subsequent proto-demetalation with TFA. Further photoreactions of 2-benzopyrylium intermediates with benzyltrimethylsilane derivatives as the donor molecule were conducted in the flow photoreactor. We confirmed that the flow reaction

Solvent-dependent chemoselective synthesis of different isoquinolinones mediated by the hypervalent iodine(III) reagent PISA

• Ze-Nan Hu,
• Yan-Hui Wang,
• Jia-Bing Wu,
• Ze Chen,
• Dou Hong and
• Chi Zhang

Beilstein J. Org. Chem. 2024, 20, 1914–1921, doi:10.3762/bjoc.20.167

• peracetic acid as a terminal oxidant [20]. Recently, Kočovský et al. disclosed a method employing 2-methylbenzamide and benzonitrile to yield 3-aryl-substituted isoquinolinone derivatives in the presence of n-butyllithium [21]. On the other hand, the intramolecular oxidative cyclization is also a viable

• option for the preparation of isoquinolinone derivatives. In 2020, two reports have been published on the conversion of alkyne-tethered N-alkoxybenzamides to isoquinolinones by intramolecular oxidative annulation, either electrochemically or using the hypervalent iodine reagent phenyliodine(III

• –intramolecular cyclization cascade with excellent chemoselectivity in aqueous CH3CN [25]. Herein, as part of our continuing studies of heterocyclic scaffold synthesis mediated by hypervalent iodine reagents, we present the solvent-dependent chemoselective synthesis of a series of isoquinolinones mediated by PISA

Novel oxidative routes to N-arylpyridoindazolium salts

• Oleg A. Levitskiy,
• Yuri K. Grishin and
• Tatiana V. Magdesieva

Beilstein J. Org. Chem. 2024, 20, 1906–1913, doi:10.3762/bjoc.20.166

• exhibit significant bioactivity [4] and can be used as intercalating agents [7]. The very limited scope of these practically useful compounds is mainly attributed to the lack of convenient synthetic approaches to them. Thus, the only example of N-arylpyridoindazolium salts was obtained via intramolecular

• intermediate (i.e., the diarylamines’ radical cation) and indicates the dominance of the intramolecular cyclization over the intermolecular C–N coupling process. Oxidation of diarylamines in the presence of an excess of trifluoroacetic acid gave no targeted pyridoindazolium salts, whereas the amount of

• diaryldihydrophenazine was increased (10%). Thus, protonation completely suppressed the intramolecular cyclization route. Heterocyclic salts S1–S3 were obtained as amorphous solids, soluble in polar solvents (acetonitrile, DMF, acetone) and chlorinated hydrocarbons (CHCl3, CH2Cl2). The structure of new N

Electrochemical radical cation aza-Wacker cyclizations

• Sota Adachi and
• Yohei Okada

Beilstein J. Org. Chem. 2024, 20, 1900–1905, doi:10.3762/bjoc.20.165

• the difference in such reactivities are intramolecular cyclizations (Scheme 1). A radical cyclization generates a five-membered ring with a less-stable primary radical, while a six-membered ring with a secondary cation is obtained through ionic cyclization. When such intramolecular cyclizations are

• the optimized conditions, unprotected amine 9 was not compatible. Although gem-dimethyl groups installed at the tether should have a positive impact on intramolecular cyclization, they were not essential for the reaction (10). In order to obtain mechanistic insight into the aza-Wacker cyclization

• -electron oxidation of the alkenes. Although a drop in oxidation potential for the alkene was observed when tethered to an aryl sulfonamide, as detailed by Moeller, rapid intramolecular cyclization would be the key [26][27][28]. We also measured cyclic voltammograms for aryl sulfonamides with and without

Access to 2-oxoazetidine-3-carboxylic acid derivatives via thermal microwave-assisted Wolff rearrangement of 3-diazotetramic acids in the presence of nucleophiles

• Ivan Lyutin,
• Vasilisa Krivovicheva,
• Grigory Kantin and
• Dmitry Dar’in

Beilstein J. Org. Chem. 2024, 20, 1894–1899, doi:10.3762/bjoc.20.164

• reported in the literature are based on the construction of the β-lactam ring (Scheme 1). The main methods include the [2 + 2] cycloaddition of acyl ketenes, generated by various methods, with imines [11][12][13][14] and the Wolff rearrangement of γ-amino-α-diazo-β-ketoesters followed by intramolecular

• cyclization [15][16]. Additionally, the manganese(III)-promoted cyclization of N-alkenyl malonamides [17][18] and the Cu(I)-catalyzed reaction of propiolic acid derivatives with nitrones (Kinugasa reaction) [19][20][21] should also be mentioned, as well as intramolecular C–H insertion using

The Groebke–Blackburn–Bienaymé reaction in its maturity: innovation and improvements since its 21st birthday (2019–2023)

• Cristina Martini,
• Muhammad Idham Darussalam Mardjan and
• Andrea Basso

Beilstein J. Org. Chem. 2024, 20, 1839–1879, doi:10.3762/bjoc.20.162

• (IPT)-mediated intramolecular oxidative annulation and a hydroxylamine-induced ring cleavage of intermediate 48. With this one-pot sequential procedure they synthesized 49 in yields up to 95% (Scheme 19). The subsequent GBB-3CR led to the unique 1H-imidazo[1,2-a]imidazole core 50 with 4 distinct

• limited to methanol due to solubility problems, and HClO4 was selected because other Brønsted acids caused amine deprotection. The GBB adducts 58 could be further elaborated through a Buchwald intramolecular nucleophilic substitution/cyclization, as it will be described in section 3.3. 3 Novel scaffolds

• -substituted products 60 underwent TFA-promoted deprotection which triggered the intramolecular cyclization to furnish the indole moiety in the desired products 61. A control experiment showed that the GBB product 60 was obtained as the sole product in the absence of acid catalyst. Another group developed the

Ugi bisamides based on pyrrolyl-β-chlorovinylaldehyde and their unusual transformations

• Alexander V. Tsygankov,
• Vladyslav O. Vereshchak,
• Tetiana O. Savluk,
• Serhiy M. Desenko,
• Valeriia V. Ananieva,
• Oleksandr V. Buravov,
• Yana I. Sakhno,
• Svitlana V. Shishkina and
• Valentyn A. Chebanov

Beilstein J. Org. Chem. 2024, 20, 1773–1784, doi:10.3762/bjoc.20.156

• component, after the formation of the expected Ugi bisamide products, subsequent post-transformations allow the synthesis of products of intramolecular cyclization [19][20][21][22] and/or products of a tandem combination of several reactions (Scheme 1) [22][23][24][25][26]. At the same time, the use of so