Understanding X-ray-induced isomerisation in photoswitchable surfactant assemblies

• Beatrice E. Jones,
• Camille Blayo,
• Jake L. Greenfield,
• Matthew J. Fuchter,
• Nathan Cowieson and
• Rachel C. Evans

Beilstein J. Org. Chem. 2024, 20, 2005–2015, doi:10.3762/bjoc.20.176

• ]. In addition to this, AAPTAB has a high thermal half-life at room temperature (5.7 years [19]), meaning there is no significant contribution from thermal Z–E isomerisation over the course of these experiments. Using in-situ UV- and visible-light irradiation with SAXS, here we measure the intermediate

• to the AzoTAB, as seen in similar amphiphilic systems [30][31]. In the case of ionisation, both stereoisomers would be expected to be affected equally. In comparison to Azo, the AAP moiety is much more stable as the Z isomer, with a thermal half-life of 5.7 years at room temperature [13]. This means

• (10 and 90 wt %), and the samples were heated to 60 °C, whilst stirring until homogenous. Samples were left to cool to room temperature whilst stirring. For the photoisomerisation studies using UV–vis absorbance spectroscopy, samples were irradiated to the PSS in a custom-built LED light box with UV

Development of a flow photochemical process for a π-Lewis acidic metal-catalyzed cyclization/radical addition sequence: in situ-generated 2-benzopyrylium as photoredox catalyst and reactive intermediate

• Masahiro Terada,
• Zen Iwasaki,
• Ryohei Yazaki,
• Shigenobu Umemiya and
• Jun Kikuchi

Beilstein J. Org. Chem. 2024, 20, 1973–1980, doi:10.3762/bjoc.20.173

• reaction conditions were further examined (see Supporting Information File 1 for details). Although the yield of 3m was improved to 19% (Table 3, entry 2) by increasing the temperature of the premixing zone from room temperature to 50 °C and reducing the flow rate from 24 mL/h to 6 mL/h (light irradiation

Regioselective alkylation of a versatile indazole: Electrophile scope and mechanistic insights from density functional theory calculations

• Pengcheng Lu,
• Luis Juarez,
• Paul A. Wiget,
• Weihe Zhang,
• Krishnan Raman and
• Pravin L. Kotian

Beilstein J. Org. Chem. 2024, 20, 1940–1954, doi:10.3762/bjoc.20.170

• -substituted indazole analogs in 44% and 40% yields, respectively, by treating compound 6 with methyl iodide and potassium carbonate in dimethylformamide (DMF) at room temperature for 17 h [40]. Other works have shown poor selectivity when 6 and other isomers similar to 6 were reacted with isopropyl iodide and

• % at room temperature to 89% when warmed to 50 °C. No information was provided to justify any N2-selectivity or the lack thereof. Should an N2–Cs+–O ion pair exist, this could reasonably account for all the reported results presented herein (vide infra). Additionally, using Cs2CO3 in dioxane provided

• no products at room temperature (see Table 1) presumably due to the low solubility of Cs2CO3 in dioxane. They also provided a single example of a Mitsunobu reaction utilizing n-pentanol, dibutyl azodicarboxylate (DBAD), and PPh3. Therefore, there is still a great need to develop an operationally

A new platform for the synthesis of diketopyrrolopyrrole derivatives via nucleophilic aromatic substitution reactions

• Vitor A. S. Almodovar and
• Augusto C. Tomé

Beilstein J. Org. Chem. 2024, 20, 1933–1939, doi:10.3762/bjoc.20.169

• synthesis of highly fluorescent DPP derivatives through straightforward nucleophilic aromatic substitution reactions with thiols and phenols. These nucleophilic substitutions occur at room temperature and manifest a remarkable selectivity for the 4-position of the pentafluorophenyl groups. Both symmetrical

• performed in dry DMF at room temperature, in the presence of a base (K2CO3 or Cs2CO3). Room temperature was chosen due to the observed rapid degradation of the starting material at elevated temperatures. The work described herein allowed us to assess the potential of DPP 2 as a novel platform for obtaining

• , 2.8 mmol) and NaH (11.2 mmol) in DMF (60 mL) was stirred at 0 °C under a nitrogen atmosphere for 30 min. At this temperature, and under vigorous stirring, a solution of pentafluorobenzyl bromide (1.7 mL, 11.2 mmol) in DMF (8 mL) was added dropwise. The mixture was stirred for 24 h at room temperature

Negishi-coupling-enabled synthesis of α-heteroaryl-α-amino acid building blocks for DNA-encoded chemical library applications

• Matteo Gasparetto,
• Balázs Fődi and
• Gellért Sipos

Beilstein J. Org. Chem. 2024, 20, 1922–1932, doi:10.3762/bjoc.20.168

• protocols [70][71]. In these experiments, compounds 6b and 6i proved to be unstable under on-DNA conditions as they failed to form esters 8b and 8i. Closely related structures, such as α-aminobenzothiazol-2-ylacetic acid is known to undergo decarboxylation at room temperature [72]. Compound 8t underwent

Solvent-dependent chemoselective synthesis of different isoquinolinones mediated by the hypervalent iodine(III) reagent PISA

• Ze-Nan Hu,
• Yan-Hui Wang,
• Jia-Bing Wu,
• Ze Chen,
• Dou Hong and
• Chi Zhang

Beilstein J. Org. Chem. 2024, 20, 1914–1921, doi:10.3762/bjoc.20.167

• using 2-alkenylbenzamide derivatives as substrates (Scheme 1). Results and Discussion We began by exploring the reaction of N-methoxy-2-(prop-1-en-2-yl)benzamide (1a) with PISA (1.5 equiv) in anhydrous acetonitrile at room temperature under argon atmosphere. 4-Methylisoquinolinone 2a was the sole

• were as follows: 1.5 equivalents of PISA and 4 Å MS in anhydrous CH3CN (0.1 M of 2a) under argon atmosphere at room temperature for 20 min. With the optimal reaction conditions in hand, we explored the scope of the method by testing various 2-alkenylbenzamide derivatives 1 (Scheme 2). When R1 was ethyl

• of 3-methylisoquinolinone as follows: reacting 1.1 equivalents of PISA in HFIP (0.1 M of 1a) containing 2.5 equivalents of H2O at room temperature for 20 minutes (Scheme 3). The general applicability of PISA in wet HFIP solvent was studied. When R1 was ethyl, isopropyl, cyclopropyl, or hydrogen

Electrochemical radical cation aza-Wacker cyclizations

• Sota Adachi and
• Yohei Okada

Beilstein J. Org. Chem. 2024, 20, 1900–1905, doi:10.3762/bjoc.20.165

• appropriate alkene (0.20 mmol), TFA (0.20 mmol), and CH3CN (0.4 mL) were added to a solution of Bu4NOTf/1,2-DCE (0.10 M, 3.6 mL) while stirring at room temperature. The resulting reaction mixture was electrolyzed at 1 mA using a CF anode (10 mm × 10 mm) and a Pt cathode (10 mm × 20 mm) in an undivided cell

Access to 2-oxoazetidine-3-carboxylic acid derivatives via thermal microwave-assisted Wolff rearrangement of 3-diazotetramic acids in the presence of nucleophiles

• Ivan Lyutin,
• Vasilisa Krivovicheva,
• Grigory Kantin and
• Dmitry Dar’in

Beilstein J. Org. Chem. 2024, 20, 1894–1899, doi:10.3762/bjoc.20.164

• high yields of the target compounds. When stored individually or in solution at room temperature, the acids 4 gradually decompose and undergo decarboxylation and other accompanying processes. The example of acid 4a demonstrates the possibility of easy amidation to form new β-lactam derivatives 3s and

The Groebke–Blackburn–Bienaymé reaction in its maturity: innovation and improvements since its 21st birthday (2019–2023)

• Cristina Martini,
• Muhammad Idham Darussalam Mardjan and
• Andrea Basso

Beilstein J. Org. Chem. 2024, 20, 1839–1879, doi:10.3762/bjoc.20.162

• discussed in more details in chapter 2). Another recent article on the use of Brønsted acids has been reported by Vilapara et al., who employed for the first time etidronic acid (1-hydroxyethane-1,1-diphosphonic acid, HEDP) as a green catalyst. Reactions were efficient at room temperature [11]; although the

• -free conditions at room temperature for 2 h [16]. Although thiamine had already been reported to be effective in other chemical transformations and its role in carbonyl activation in vivo through its thiazole ring is well known, no mechanism of action in the GBB condensation was proposed by the authors

• et al. reported the first biocatalytic GBB reaction using lipase [21]. The model reaction depicted in Scheme 2 (R = t-Bu) was tested in ethanol at room temperature with various enzymes, where Candida antarctica lipase B (CALB) and Aspergillus niger gave best results, affording 3 in 63% and 64% yields

Discovery of antimicrobial peptides clostrisin and cellulosin from Clostridium: insights into their structures, co-localized biosynthetic gene clusters, and antibiotic activity

• Moisés Alejandro Alejo Hernandez,
• Katia Pamela Villavicencio Sánchez,
• Rosendo Sánchez Morales,
• Karla Georgina Hernández-Magro Gil,
• David Silverio Moreno-Gutiérrez,
• Eddie Guillermo Sanchez-Rueda,
• Yanet Teresa-Cruz,
• Brian Choi,
• Armando Hernández Garcia,
• Alba Romero-Rodríguez,
• Oscar Juárez,
• Siseth Martínez-Caballero,
• Mario Figueroa and
• Corina-Diana Ceapă

Beilstein J. Org. Chem. 2024, 20, 1800–1816, doi:10.3762/bjoc.20.159

• mL urea buffer (8 M urea, 100 mM NaH2PO4, 10 mM Tris-base), pH 8.0, frozen at −80 °C, and then thawed at room temperature. The cell lysate was clarified by centrifugation and incubated with 1 mL Ni-NTA resin (Qiagen). The precursor protein was purified using the standard protocol from Qiagen for

• GraphPad (version 8.0.2). Atomic force microscopy AFM characterization was conducted using a MultiMode 8-HR (Bruker). Samples containing S. epidermis at an OD600 > 1 were incubated with the lanthipeptides at room temperature for 1 and 5 hours. Subsequently, 9 µL of the samples were combined with 1 µL of a

• 0.1% w/v poly-ʟ-lysin solution in water (Sigma-Aldrich) and immediately deposited onto freshly cleaved mica to be incubated for 10 min at room temperature to allow adsorption. The surface was then rinsed using 600 µL of ultrapure 0.2 µm filtered water and slowly dried using compressed air. Imaging was

Oxidative fluorination with Selectfluor: A convenient procedure for preparing hypervalent iodine(V) fluorides

• Samuel M. G. Dearman,
• Xiang Li,
• Yang Li,
• Kuldip Singh and
• Alison M. Stuart

Beilstein J. Org. Chem. 2024, 20, 1785–1793, doi:10.3762/bjoc.20.157

• efficient separation from the excess Selectfluor and its byproduct. Reducing the amount of Selectfluor to 2.5 equivalents and the reaction time to 24 hours (Table 2, entry 2) resulted in a similar high yield of difluoroiodane 6. The reaction also proceeded well at either room temperature for 24 hours (Table

• afford iodoalcohol 14 in 93% yield. In the final step iodoalcohol 14 underwent an oxidative fluorination with Selectfluor at room temperature to deliver methyl(trifluoromethyl)fluoroiodane 15 in a good 68% yield after recrystallisation from toluene. Although bis(trifluoromethyl)fluoroiodane 19 has been

• charged to a dry Schlenk flask under a nitrogen atmosphere. The flask was sealed and heated to 40 °C for 24 hours. After cooling the reaction mixture to room temperature, the solvent was removed in vacuo to afford a crude orange solid. The orange solid was extracted with dry dichloromethane (3 × 5 mL

Ugi bisamides based on pyrrolyl-β-chlorovinylaldehyde and their unusual transformations

• Alexander V. Tsygankov,
• Vladyslav O. Vereshchak,
• Tetiana O. Savluk,
• Serhiy M. Desenko,
• Valeriia V. Ananieva,
• Oleksandr V. Buravov,
• Yana I. Sakhno,
• Svitlana V. Shishkina and
• Valentyn A. Chebanov

Beilstein J. Org. Chem. 2024, 20, 1773–1784, doi:10.3762/bjoc.20.156

• possibilities for subsequent post-transformation reactions. The synthesis of the target Ugi bisamides 5–8 was carried out at room temperature in ethanol with stirring for 24–48 hours (depending on the type of starting material) with a yield of 54–93% (Table 1). It is worth noting that the Ugi-4CR reaction also

• corresponding amide 10. The expected fact that the amides 10 could not be formed from the ketobisamides 12 (Table 3) was also confirmed; stirring the latter in MeCN or EtOH in the presence of HCl at room temperature or under heating did not lead to formation, not even to the appearance of traces of the amide

Harnessing unprotected deactivated amines and arylglyoxals in the Ugi reaction for the synthesis of fused complex nitrogen heterocycles

• Javier Gómez-Ayuso,
• Pablo Pertejo,
• Tomás Hermosilla,
• Israel Carreira-Barral,
• Roberto Quesada and
• María García-Valverde

Beilstein J. Org. Chem. 2024, 20, 1758–1766, doi:10.3762/bjoc.20.154

• procedure. Thus, initially the amine 3 (1 equiv) was added to a solution of the arylglyoxal 1 (1 equiv) in methanol and the mixture was stirred for 15 min. Then, the acid 2 (1 equiv) and the isocyanide 4 (1 equiv) were added and the reaction was stirred at room temperature for 24 h. Fortunately, after the

Synthesis of polycyclic aromatic quinones by continuous flow electrochemical oxidation: anodic methoxylation of polycyclic aromatic phenols (PAPs)

• Hiwot M. Tiruye,
• Solon Economopoulos and
• Kåre B. Jørgensen

Beilstein J. Org. Chem. 2024, 20, 1746–1757, doi:10.3762/bjoc.20.153

• . HCl and 3–4 drops of water. The mixture was stirred at room temperature for 0.5 h and poured into ice water (5 mL). The precipitated quinone was filtered off, thoroughly washed with water, and dried under vacuum to yield the pure product. General procedure C: combined electrochemical oxidation and

• hexafluorophosphate ([NBu4] [PF6]) solution in acetonitrile. The solvent was dried and degassed using N2 prior to each experiment. All experiments were conducted at room temperature. All redox potentials were calibrated against ferrocene/ferrocenium (Fc/Fc+) redox couple. Cyclic voltammograms of PAPs first scan at

Syntheses and medicinal chemistry of spiro heterocyclic steroids

• Laura L. Romero-Hernández,
• Ana Isabel Ahuja-Casarín,
• Penélope Merino-Montiel,
• Sara Montiel-Smith,
• José Luis Vega-Báez and
• Jesús Sandoval-Ramírez

Beilstein J. Org. Chem. 2024, 20, 1713–1745, doi:10.3762/bjoc.20.152

• tolylhydrazonoyl chloride derivative 54 [35]. The reaction conducted in the presence of silver acetate at room temperature, achieved yields of 78–81% of the 16-spiropyrazolines 55a,b (Scheme 17). 6-Spiroimidazoline steroids In 2015, Dar’s group reported a small library of spiroimidazo[1,2-a]pyridines obtained

Supramolecular assemblies of amphiphilic donor–acceptor Stenhouse adducts as macroscopic soft scaffolds

• Ka-Lung Hung,
• Leong-Hung Cheung,
• Yikun Ren,
• Ming-Hin Chau,
• Yan-Yi Lam,
• Takashi Kajitani and
• Franco King-Chi Leung

Beilstein J. Org. Chem. 2024, 20, 1590–1603, doi:10.3762/bjoc.20.142

• sonicated for 10 min at room temperature to afford a deep-purple solution. The obtained solution was directly used or diluted for microscopic and spectroscopic measurements. TEM TEM was performed on a JEOL model JEM-2010 transmission electron microscope with tungsten hair pin type filament operating at 120

Electrocatalytic hydrogenation of cyanoarenes, nitroarenes, quinolines, and pyridines under mild conditions with a proton-exchange membrane reactor

• Koichi Mitsudo,
• Atsushi Osaki,
• Haruka Inoue,
• Eisuke Sato,
• Naoki Shida,
• Mahito Atobe and
• Seiji Suga

Beilstein J. Org. Chem. 2024, 20, 1560–1571, doi:10.3762/bjoc.20.139

• cyanoarenes, nitroarenes, quinolines, and pyridines using a proton-exchange membrane (PEM) reactor was developed. Cyanoarenes were then reduced to the corresponding benzylamines at room temperature in the presence of ethyl phosphate. The reduction of nitroarenes proceeded at room temperature, and a variety of

• mmol; solvent, CH2Cl2 (0.5 M); flow rate of the solution of 6a, 0.75 mL min−1; flow rate of H2 gas, 100 mL min−1; reaction temperature, room temperature; current density, 50 mA cm−2. The solution was circulated until the passage of 50 F mol−1 (10 h). The yields were determined by 1H NMR analysis using

• H2 gas, 100 mL min−1; reaction temperature, room temperature; current density, 50 mA cm−2 (10 h). The solution was circulated until the passage of 50 F mol−1. The yields were determined by 1H NMR analysis using 1,1,2,2-tetrachloroethane as an internal standard. Plausible mechanism for the reduction

Benzylic C(sp³)–H fluorination

• Alexander P. Atkins,
• Alice C. Dean and
• Alastair J. J. Lennox

Beilstein J. Org. Chem. 2024, 20, 1527–1547, doi:10.3762/bjoc.20.137

• attributed this to the increased solubility and concentration of NFSI in the AIBN conditions, which were performed at elevated temperatures, promoting facile trapping of a primary radical. In contrast, the decatungstate conditions, which operated at room temperature where NFSI is not completely dissolved and

Primary amine-catalyzed enantioselective 1,4-Michael addition reaction of pyrazolin-5-ones to α,β-unsaturated ketones

• Pooja Goyal,
• Akhil K. Dubey,
• Raghunath Chowdhury and
• Amey Wadawale

Beilstein J. Org. Chem. 2024, 20, 1518–1526, doi:10.3762/bjoc.20.136

• primary amine catalysts (see Table S1 in Supporting Information File 1) in toluene at room temperature (30–32 °C). When the test reaction was conducted in the presence of 15 mol % of 9-amino-9-deoxy-epicinchonidine (I) as catalyst [30] for 12 h and treated with Ac2O followed by DABCO, the reaction gave

• (Table 1, entry 11). Subsequently, the effect of concentration on the reaction outcome was also studied. In dilute conditions, both the yield and enantioselectivity of the product 3aa were improved to 80% and 94%, respectively, at room temperature (Table 1, entry 12). Taking into account the results of

• the optimization studies mentioned above, the catalytic system I (15 mol %)/A5 (30 mol %) in CHCl3 (1 mL) at room temperature (30–32 °C) was selected as the optimum reaction conditions (Table 1, entry 12). Under identical optimized reaction conditions, the catalytic system II (15 mol %)/A5 (30 mol

Towards an asymmetric β-selective addition of azlactones to allenoates

• Behzad Nasiri,
• Ghaffar Pasdar,
• Paul Zebrowski,
• Katharina Röser,
• David Naderer and
• Mario Waser

Beilstein J. Org. Chem. 2024, 20, 1504–1509, doi:10.3762/bjoc.20.134

• the use of 3 equiv Cs2CO3 in toluene (0.05 M) at room temperature as the best-suited conditions (Table 1, entry 13), allowing for the synthesis of 5a in moderate yield (61%) and enantioselectivity (81:19 er). With optimized conditions for the synthesis of enantioenriched (−)-5a at hand, we next

• ), catalyst B2 (10 mol % related to 1), and Cs2CO3 (3 equiv). Then the respective allenoate 3 (2 equiv) and toluene (0.05 M with respect to 1) were added and the mixture was stirred at room temperature for 24 h (Ar atmosphere). The crude product was passed through a short column of silicagel (rinsed with DCM

Electrophotochemical metal-catalyzed synthesis of alkylnitriles from simple aliphatic carboxylic acids

• Yukang Wang,
• Yan Yao and
• Niankai Fu

Beilstein J. Org. Chem. 2024, 20, 1497–1503, doi:10.3762/bjoc.20.133

• esters, the so called "Barton esters", for decarboxylative cyanation of aliphatic acids with tosyl cyanide as the nitrile source under visible light irradiation at room temperature [21][22]. Although two synthetic steps are required, this is the first practical decarboxylative cyanation protocol because

Photoswitchable glycoligands targeting Pseudomonas aeruginosa LecA

• Yu Fan,
• Ahmed El Rhaz,
• Stéphane Maisonneuve,
• Emilie Gillon,
• Maha Fatthalla,
• Franck Le Bideau,
• Guillaume Laurent,
• Samir Messaoudi,
• Anne Imberty and
• Juan Xie

Beilstein J. Org. Chem. 2024, 20, 1486–1496, doi:10.3762/bjoc.20.132

• Z/E ratios during irradiation, showing an excellent photoconversion yield of Z/E = 99:1 at PSS370, and E/Z = 87:13 at PSS485 in D2O/5% DMSO (Figure 3). As the Z-isomer is metastable, its half-life has been determined to be 44.4 h in water at room temperature (Figure S9 in Supporting Information File

• the half-live varied from 26 h to 29 days at room temperature depending on the type of glycosidic linkage and the substitution pattern on the azobenzene moiety. The bistability of the azobenzene derivatives is suitable for the investigation of azobenzene isomers on the binding affinity with LecA. All

• was stirred at room temperature until total deprotection. The solution was neutralized using Amberlite IR-120 (H), filtered, concentrated and the crude material used without further purification to give the desired product in quantitative yield. (A) Selected monovalent inhibitors for PA LecA and (B

Selectfluor and alcohol-mediated synthesis of bicyclic oxyfluorination compounds by Wagner–Meerwein rearrangement

• Ziya Dağalan,
• Muhammed Hanifi Çelikoğlu,
• Saffet Çelik,
• Ramazan Koçak and
• Bilal Nişancı

Beilstein J. Org. Chem. 2024, 20, 1462–1467, doi:10.3762/bjoc.20.129

• used as nucleophiles. First, optimization experiments were carried out for fluoroalkoxy reactions with benzonorbornadiene (1a, Table 1). As a result of experiments conducted in six different solvents at room temperature with 1.0 equivalent of selectflor and 1.0 equivalent of methanol, it was observed

• that there was a 12% conversion with CH3CN and a 10% conversion with nitromethane, while no conversion occurred with the other solvents including, CH2Cl2, EtOAc, 1,4-dioxane and DMF (Table 1, entries 1–6). To see the effect of reactant ratios on yields, when reactants were gradually increased at room

• temperature, the best result was obtained with 1.2 equivalents of selectfluor and 2.4 equivalents of methanol with 21% conversion (Table 1, entry 7). There was no significant change at higher equivalents. At 50 °C, 30% conversion was achieved with 1.2 equivalents of selectfluor and 2.4 equivalents of methanol

Synthesis of 4-functionalized pyrazoles via oxidative thio- or selenocyanation mediated by PhICl₂ and NH₄SCN/KSeCN

• Jialiang Wu,
• Haofeng Shi,
• Xuemin Li,
• Jiaxin He,
• Chen Zhang,
• Fengxia Sun and
• Yunfei Du

Beilstein J. Org. Chem. 2024, 20, 1453–1461, doi:10.3762/bjoc.20.128

• oxidant (Scheme 1a–c) [49]. For example, Xu reported that a series of 4-thiocyanated 5-hydroxy-1H-pyrazoles was synthesized by a K2S2O8-promoted direct thiocyanation of pyrazolin-5-ones at room temperature, using NH4SCN as thiocyanogen source (Scheme 1a) [20]. Similarly, utilizing NH4SCN and K2S2O8

Rapid construction of tricyclic tetrahydrocyclopenta[4,5]pyrrolo[2,3-b]pyridine via isocyanide-based multicomponent reaction

• Xiu-Yu Chen,
• Ying Han,
• Jing Sun and
• Chao-Guo Yan

Beilstein J. Org. Chem. 2024, 20, 1436–1443, doi:10.3762/bjoc.20.126

• ), dimethyl but-2-ynedioate (2a) and 5,6-unsubstituted dihydropyridine 3a as standard reaction. The main results are summarized in Table 1. The expected product was not observed when the three-component reaction was carried out in methanol, ethanol or tetrahydrofuran at room temperature (Table 1, entries 1–3

• ). The reaction in toluene, methylene dichloride or acetonitrile at room temperature afforded an unexpected tricyclic compound 4a in 12–18% yields (Table 1, entries 4–6). 1H NMR spectra clearly indicated that two molecules of dimethyl but-2-ynedioates took part in the reaction. The yields of the product