Synthesis of electrophile-tethered preQ₁ analogs for covalent attachment to preQ₁ RNA

• Laurin Flemmich and
• Ronald Micura

Beilstein J. Org. Chem. 2025, 21, 483–489, doi:10.3762/bjoc.21.35

• protecting groups and time-consuming purification steps, that provides preQ1 in 43% overall yield with a purity of >98% (Scheme 2). The approach is based on the cyclocondensation reaction between 2-chloro-3-cyanopropan-1-al (6) (itself obtained from chloroacetonitrile and methyl formate) and 2,6

The effect of neighbouring group participation and possible long range remote group participation in O-glycosylation

• Rituparna Das and
• Balaram Mukhopadhyay

Beilstein J. Org. Chem. 2025, 21, 369–406, doi:10.3762/bjoc.21.27

• glycochemists. The protecting building blocks on the glycosides contribute significantly in attaining the required stereochemistry of the resulting glycosides. Strategic installation of suitable protecting groups in the C-2 position, vicinal to the anomeric carbon, renders neighbouring group participation

• , whereas protecting groups in the distal C-3, C-4, and C-6 positions are often claimed to exhibit remote group participation with the anomeric carbon. Neighbouring group participation and remote group participation are being widely studied to help the glycochemists design the synthetic protocols for

• idea of glycosylation mechanisms to enable the readers to have a background idea as a reference before going to describe the role of protecting groups. The mechanistic pathway of glycosylation strongly depends on many factors, especially, the concentration of the participating moieties, the reaction

Surprising acidity for the methylene of 1,3-indenocorannulenes?

• Shi Liu,
• Märt Lõkov,
• Sofja Tshepelevitsh,
• Ivo Leito,
• Kim K. Baldridge and
• Jay S. Siegel

Beilstein J. Org. Chem. 2024, 20, 3144–3150, doi:10.3762/bjoc.20.260

• . Access to the dianion of BFC presages an interesting diradical and this was achieved by inclusion of mesityl protecting groups [27]. Extension of the BFC model with thiophene provides further interesting materials [28]. A reasonable corollary to this behavior would assert that derivatives of TBF and

Hypervalent iodine-mediated intramolecular alkene halocyclisation

• Charu Bansal,
• Oliver Ruggles,
• Albert C. Rowett and
• Alastair J. J. Lennox

Beilstein J. Org. Chem. 2024, 20, 3113–3133, doi:10.3762/bjoc.20.258

• iodosylbenzene 9 (Scheme 7) [32]. The authors reported the synthesis of 3-fluoropyrrolidines 14 with BF3·OEt2 as a source of fluoride for the intramolecular aminofluorination of homoallylic amines 13. The authors explored the reaction with various protecting groups on nitrogen and substituents on the alkene and

• alkyl chain. Substrates with p-tolylsulfonyl (Ts), p-nitrobenzenesulfonyl (Ns) and benzenesulfonyl (Bs) protecting groups were cyclised in high yields to the corresponding 3-fluoropyrrolidine derivatives 14. A range of unsaturated amines were successfully cyclised. However, substrates with substituents

Synthesis and conformational analysis of pyran inter-halide analogues of ᴅ-talose

• Olivier Lessard,
• Mathilde Grosset-Magagne,
• Paul A. Johnson and
• Denis Giguère

Beilstein J. Org. Chem. 2024, 20, 2442–2454, doi:10.3762/bjoc.20.208

• to be confirmed by single-crystal diffraction analysis (see below) [33]. Unfortunately, trifluorinated analogue 12 was not crystalline. Thus, we removed the acetyl protecting groups and generated the corresponding p-bromobenzoate derivative 17 to obtain suitable crystalline material [24][34]. In

Multicomponent syntheses of pyrazoles via (3 + 2)-cyclocondensation and (3 + 2)-cycloaddition key steps

• Ignaz Betcke,
• Alissa C. Götzinger,
• Maryna M. Kornet and
• Thomas J. J. Müller

Beilstein J. Org. Chem. 2024, 20, 2024–2077, doi:10.3762/bjoc.20.178

• Scheme 7 [56]. In a consecutive process, after removing the protecting groups through acidic cleavage and cyclocondensation with 1,3-dicarbonyl compounds, the corresponding pyrazoles 25 were formed in a one-pot procedure. Interestingly, both β-aminoacrolein and β-aminovinylketones can also serve as

Solvent-dependent chemoselective synthesis of different isoquinolinones mediated by the hypervalent iodine(III) reagent PISA

• Ze-Nan Hu,
• Yan-Hui Wang,
• Jia-Bing Wu,
• Ze Chen,
• Dou Hong and
• Chi Zhang

Beilstein J. Org. Chem. 2024, 20, 1914–1921, doi:10.3762/bjoc.20.167

• conditions, leading to 3l. In particular, the presence of diverse nitrogen protecting groups, such as benzyloxy, phenyl, and alkyl, did not affect the smooth reaction, affording 3m–o in a moderate yield of 32–64% (Scheme 4). Just by changing the solvent of the reaction, we were able to obtain the isomeric 3

Harnessing unprotected deactivated amines and arylglyoxals in the Ugi reaction for the synthesis of fused complex nitrogen heterocycles

• Javier Gómez-Ayuso,
• Pablo Pertejo,
• Tomás Hermosilla,
• Israel Carreira-Barral,
• Roberto Quesada and
• María García-Valverde

Beilstein J. Org. Chem. 2024, 20, 1758–1766, doi:10.3762/bjoc.20.154

• [11]. Different strategies have been developed to avoid these competitive reactions, the most common ones being the use of protecting groups (Ugi/deprotection/cyclization strategy) [12][13][14] or of surrogates of amines [15]. However, direct incorporation of the second amine without derivatization is

• protecting groups, as the reduced nucleophilic character of the amino group of the anthranilic acid would prevent its participation in the Ugi reaction. In this way, the Ugi reaction was performed using arylglyoxals 1, anthranilic acid derivatives 2, amines 3 and isocyanides 4 following the most common

Chemo-enzymatic total synthesis: current approaches toward the integration of chemical and enzymatic transformations

• Ryo Tanifuji and
• Hiroki Oguri

Beilstein J. Org. Chem. 2024, 20, 1693–1712, doi:10.3762/bjoc.20.151

• deprotonation to form exomethylene. Subsequent in situ removal of the silyl protecting groups led to the total synthesis of brassicicene K (27). Thus, the biosynthetic proposal featuring the Wagner–Meerwein-type skeletal rearrangement (9→11) through the catalysis of P450 enzyme BscF was successfully emulated by

Ring opening of photogenerated azetidinols as a strategy for the synthesis of aminodioxolanes

• Henning Maag,
• Daniel J. Lemcke and
• Johannes M. Wahl

Beilstein J. Org. Chem. 2024, 20, 1671–1676, doi:10.3762/bjoc.20.148

• demanding benzhydryl (Bzh) group showed progress towards azetidinol 3l with a yield of 10% (Table 1, entry 12). As it can be extracted from our study, sulfonyl-based protecting groups hold a unique role in the Norrish–Yang cyclization of α-aminoacetophenones, which was underpinned by the good performances

Synthesis of 1,4-azaphosphinine nucleosides and evaluation as inhibitors of human cytidine deaminase and APOBEC3A

• Maksim V. Kvach,
• Stefan Harjes,
• Harikrishnan M. Kurup,
• Geoffrey B. Jameson,
• Elena Harjes and
• Vyacheslav V. Filichev

Beilstein J. Org. Chem. 2024, 20, 1088–1098, doi:10.3762/bjoc.20.96

• racemisation, and nucleoside 14 with the same α/β ratio of 3:2 formed from either anomerically pure 17 or from a mixture of the anomers. Catalytic hydrogenation is usually used for the removal of benzyl protecting groups. However, standard hydrogenation conditions using 10% Pd/C led to reduction of the C=C

Auxiliary strategy for the general and practical synthesis of diaryliodonium(III) salts with diverse organocarboxylate counterions

• Naoki Miyamoto,
• Daichi Koseki,
• Kohei Sumida,
• Elghareeb E. Elboray,
• Naoko Takenaga,
• Ravi Kumar and
• Toshifumi Dohi

Beilstein J. Org. Chem. 2024, 20, 1020–1028, doi:10.3762/bjoc.20.90

• % yield. Notably, this strategy allowed the synthesis of (diacetoxyiodo)arenes bearing acid-sensitive Boc protecting groups (1i) and heteroaromatic moieties such as pyridyl (1j) and thienyl (1k) groups. The reaction of bis(diacetoxyiodo)arene (1l) with 1,3,5-trimethoxybenzene (2.1 equiv) under the same

Enantioselective synthesis of β-aryl-γ-lactam derivatives via Heck–Matsuda desymmetrization of N-protected 2,5-dihydro-1H-pyrroles

• Arnaldo G. de Oliveira Jr.,
• Martí F. Wang,
• Rafaela C. Carmona,
• Danilo M. Lustosa,
• Sergei A. Gorbatov and
• Carlos R. D. Correia

Beilstein J. Org. Chem. 2024, 20, 940–949, doi:10.3762/bjoc.20.84

• -nitrophenyl)sulfonyl (2-Ns) as alternative protecting groups of 2,5-dihydro-1H-pyrrole (Scheme 5). Although the results with the 2-Ns protecting group were somewhat disappointing, the results with 4-Ns group were more promising, even with a welcome increase in the enantiomeric ratio in some cases (4dd and 4de

• for the treatment of muscle spasticity from spinal cord injury and multiple sclerosis [16]. Among all the sulfonyl-protecting groups used in this work, the removal of the N-nosyl group required milder conditions [22]. Deprotection of N-nosylated 4dd and 4de with thiophenol and K2CO3 at room

• 93:7. The methodology was shown to be robust, allowing the use of different protecting groups at the nitrogen of the 4-pyrroline substrate. We also report straightforward synthetic routes to obtain (R)-rolipram (5b, 61% overall yield, 3 steps, 82:18 er) and (R)-baclofen hydrochloride (6, 49% overall

(Bio)isosteres of ortho- and meta-substituted benzenes

• H. Erik Diepers and
• Johannes C. L. Walker

Beilstein J. Org. Chem. 2024, 20, 859–890, doi:10.3762/bjoc.20.78

• and aldehyde protecting groups. Recently, Lebold, Sarpong, and co-workers showed that 1,2-BCPs (±)-14a–e are also accessible from 1,5-disubstituted 2-azabicyclo[2.1.1]hexanes 13 (2-aza-1,5-BCHs) through a skeletal editing strategy utilising commercially available Levin’s reagent [30][31] (Scheme 1D

SOMOphilic alkyne vs radical-polar crossover approaches: The full story of the azido-alkynylation of alkenes

• Julien Borrel and
• Jerome Waser

Beilstein J. Org. Chem. 2024, 20, 701–713, doi:10.3762/bjoc.20.64

• partial conversion of the starting material was observed. We postulated that the presence of two Boc protecting groups on the nitrogen makes the oxidation of the C-centered radical challenging. By using 1o only bearing one protecting group the desired product could be obtained, albeit in only 17% yield

Ligand effects, solvent cooperation, and large kinetic solvent deuterium isotope effects in gold(I)-catalyzed intramolecular alkene hydroamination

• Ruichen Lan,
• Brock Yager,
• Yoonsun Jee,
• Cynthia S. Day and
• Amanda C. Jones

Beilstein J. Org. Chem. 2024, 20, 479–496, doi:10.3762/bjoc.20.43

• undertaking a 1H NMR spectroscopic kinetic survey of solvent, ligand, and substituent effects on the general reaction 1 → 3 (with a variety of N-protecting groups), to supplement known qualitative observations. We found that, (1) electron-withdrawing phosphines accelerate hydroamination, (2) reactions are

Optimizations of lipid II synthesis: an essential glycolipid precursor in bacterial cell wall synthesis and a validated antibiotic target

• Milandip Karak,
• Cian R. Cloonan,
• Brad R. Baker,
• Rachel V. K. Cochrane and
• Stephen A. Cochrane

Beilstein J. Org. Chem. 2024, 20, 220–227, doi:10.3762/bjoc.20.22

• combinations of protecting groups on glycosyl acceptors and donors, as represented by compounds 1a and 2a in Figure 2, are proficient in the efficient generation of lipid II disaccharide [35][36]. Subsequently, significant endeavors have been directed towards the exploration of glycosyl donors, such as N

• . Finally, the benzyl-protecting groups in compound 7 were cleaved via hydrogenolysis, followed by co-evaporation of the resulting crude product in pyridine. This yielded a monopyridyl salt, setting the stage for the final lipid coupling and deprotection sequence. To establish the vital lipid diphosphate

Comparison of glycosyl donors: a supramer approach

• Anna V. Orlova,
• Nelly N. Malysheva,
• Maria V. Panova,
• Nikita M. Podvalnyy,
• Michael G. Medvedev and
• Leonid O. Kononov

Beilstein J. Org. Chem. 2024, 20, 181–192, doi:10.3762/bjoc.20.18

• and straightforward as it is usually considered. Keywords: concentration; glycosylation; protecting groups; reactivity; sialic acids; stereoselectivity; Introduction Glycoconjugates containing sialic acid occur on the surface of all cell types in a variety of organisms. They participate in a broad

Synthesis of the 3’-O-sulfated TF antigen with a TEG-N₃ linker for glycodendrimersomes preparation to study lectin binding

• Mark Reihill,
• Hanyue Ma,
• Dennis Bengtsson and
• Stefan Oscarson

Beilstein J. Org. Chem. 2024, 20, 173–180, doi:10.3762/bjoc.20.17

• been developed for further interaction studies with lectins (galectins and siglecs). The synthesis of the 3’-Su-TF antigen 2 comprises eight steps from the known N-galactosamine donor 3, where two of the steps, removal of the Troc- and DTBS protecting groups are performed in the same pot and the

Long oligodeoxynucleotides: chemical synthesis, isolation via catching-by-polymerization, verification via sequencing, and gene expression demonstration

• Yipeng Yin,
• Reed Arneson,
• Alexander Apostle,
• Adikari M. D. N. Eriyagama,
• Komal Chillar,
• Emma Burke,
• Martina Jahfetson,
• Yinan Yuan and
• Shiyue Fang

Beilstein J. Org. Chem. 2023, 19, 1957–1965, doi:10.3762/bjoc.19.146

• long ODN synthesis and purification, correct sequence selection, gene construction to protein synthesis has been established. Because the present long ODN synthesis method does not need PCR assembly or ligation of short ODNs and secondary structures of ODNs are prevented by protecting groups during de

Construction of diazepine-containing spiroindolines via annulation reaction of α-halogenated N-acylhydrazones and isatin-derived MBH carbonates

• Xing Liu,
• Wenjing Shi,
• Jing Sun and
• Chao-Guo Yan

Beilstein J. Org. Chem. 2023, 19, 1923–1932, doi:10.3762/bjoc.19.143

• [indoline-3,5'-[1,2]diazepines] 3a–m were obtained in reasonable to good yields. Both, α-chloro- and α-bromo-N-acylhydrazones could be successfully used in the reaction and gave similar results. Also, hydrazones with different benzoyl-protecting groups were well tolerated in the reaction. In general, α

Biphenylene-containing polycyclic conjugated compounds

• Cagatay Dengiz

Beilstein J. Org. Chem. 2023, 19, 1895–1911, doi:10.3762/bjoc.19.141

• through Sonogashira cross-coupling reactions with alkynes featuring different protecting groups such as TIPS, TES, and TIBS. Scheme 7 illustrates the derivatization process using one of the chosen examples, specifically the TIPS group. Accordingly, the cross-coupling products 33a–c were obtained in yields

• affected by the molecular packing, they have modified compound 34a using different protecting groups. In this context, triethylsilyl (TES), triisopropylsilyl (TIPS), and triisobutylsilyl (TIBS) groups were incorporated into the structure considering the increased dimensions. Thus, derivatives 34a-TES and

N-Sulfenylsuccinimide/phthalimide: an alternative sulfenylating reagent in organic transformations

• Fatemeh Doraghi,
• Seyedeh Pegah Aledavoud,
• Mehdi Ghanbarlou,
• Bagher Larijani and
• Mohammad Mahdavi

Beilstein J. Org. Chem. 2023, 19, 1471–1502, doi:10.3762/bjoc.19.106

• sulfur reagents resulted in thiolated products 92 up to 99% ee, in the presence of quinidine as the organocatalyst (Scheme 38) [72]. For the study of enantioselectivity of products, different N-substituted oxindoles with H, Me, phenyl, and benzyl groups were investigated. As the size of N-protecting

• groups increased, the percentage of enantioselectivity decreased, where in the case of NH-oxindoles, the product was achieved with only 6% ee. Another sulfenylation at the 3-position of unprotected oxindoles with N-(phenylthio)phthalimide was reported by Feng et al. [73]. A chiral N,N′-dioxide-Sc(OTf)3

Synthesis of ether lipids: natural compounds and analogues

• Marco Antônio G. B. Gomes,
• Alicia Bauduin,
• Chloé Le Roux,
• Romain Fouinneteau,
• Wilfried Berthe,
• Mathieu Berchel,
• Hélène Couthon and
• Paul-Alain Jaffrès

Beilstein J. Org. Chem. 2023, 19, 1299–1369, doi:10.3762/bjoc.19.96

• mesylation produced 17.3. Then, the nucleophilic substitution (SN2) reaction of benzoate with 17.3 produced the benzoate ester 17.4 with an inversion of configuration. Then, the two protecting groups (ester and trityl) were removed to produce (S)-17.6. The modification of the sn-2 position is illustrated in

• ) myo-inositol (20.6). The oxidation of the phosphite intermediate with m-CPBA followed by the catalytic hydrogenolysis of the benzyl protecting groups produced PIP3-PAF (20.7). 2 Edelfosine and diether analogues PAF and PAF-analogues that feature an acyl or more generally an ester group in sn-2

Aromatic C–H bond functionalization through organocatalyzed asymmetric intermolecular aza-Friedel–Crafts reaction: a recent update

• Anup Biswas

Beilstein J. Org. Chem. 2023, 19, 956–981, doi:10.3762/bjoc.19.72

• -workers demonstrated an enantioselective aza-Friedel–Crafts reaction between indoles 4 and isatin-derived ketimines 49. A chiral phase transfer catalyst O3 derived from urea assisted this organic transformation featuring a C3–H bond functionalization of indoles. Different protecting groups for the imine

• nitrogen and ring nitrogen of 49 were screened under optimal reaction conditions where Cbz and benzyl were the best protecting groups in terms of enantioselectivities. A product library was prepared by varying sterically and electronic divergent functionalities in the carbocyclic rings of both reactants