Regioselective alkylation of a versatile indazole: Electrophile scope and mechanistic insights from density functional theory calculations

• Pengcheng Lu,
• Luis Juarez,
• Paul A. Wiget,
• Weihe Zhang,
• Krishnan Raman and
• Pravin L. Kotian

Beilstein J. Org. Chem. 2024, 20, 1940–1954, doi:10.3762/bjoc.20.170

• moisture-sensitive reagents were performed under a nitrogen or argon atmosphere. Silica gel chromatography was performed using prepacked silica gel columns (RediSep® Rf, Teledyne ISCO). An aluminum block atop a hotplate with a thermocouple was used to heat reactions to the specified temperatures. NMR

• purified by chromatography (silica [24 g], eluting with EtOAc in hexane from 0–70%) to give methyl 5-bromo-1-alkyl-1H-indazole-3-carboxylate, in 90–98%. For 15a, 284.5 mg, 90%, as a white solid. Mp 141.3 °C; 1H NMR (300 MHz, DMSO-d6) δ 8.19 (dd, J = 1.9, 0.7 Hz, 1H), 7.82 (dd, J = 9.0, 0.7 Hz, 1H), 7.65

• (0.5 mL, 12.4 mmol) at 0 °C, followed by adding DEAD (1.718 mL, 10.85 mmol). The resulting mixture was stirred for 10 min at 0 °C, warmed to 50 °C, and stirred for 2 h. After TLC showed completion, the solvent was removed, and the residue was purified by chromatography (silica [24 g], eluting with

A new platform for the synthesis of diketopyrrolopyrrole derivatives via nucleophilic aromatic substitution reactions

• Vitor A. S. Almodovar and
• Augusto C. Tomé

Beilstein J. Org. Chem. 2024, 20, 1933–1939, doi:10.3762/bjoc.20.169

• chromatography (TLC) was carried out on precoated sheets with silica gel (Merck 60, 0.2 mm thick). Preparative TLC was carried out on 20 cm × 20 cm glass plates precoated with a layer of silica gel 60 (0.5 mm thick) and activated in an oven at 100 °C for 12 h. Melting points were determined with a Büchi B-540

• and then it was diluted with CH2Cl2 and water. The organic layer was separated and washed with water and brine. The product was isolated by column chromatography on silica gel using CH2Cl2 as the eluent. Yield: 61%; mp: 278–280 °C; 1H NMR (300 MHz, CDCl3) δ (ppm) 7.62–7.66 (m, 4H), 7.47–7.52 (m, 4H

Electrochemical radical cation aza-Wacker cyclizations

• Sota Adachi and
• Yohei Okada

Beilstein J. Org. Chem. 2024, 20, 1900–1905, doi:10.3762/bjoc.20.165

• chromatography (hexane/ethyl acetate) gave the corresponding ring compounds. Cyclic voltammograms for aryl sulfonamides. Radical and ionic intramolecular cyclizations. Electrochemical and photochemical aza-Wacker cyclizations. Scope of electrochemical aza-Wacker cyclization. Reaction conditions: the alkene (0.20

The Groebke–Blackburn–Bienaymé reaction in its maturity: innovation and improvements since its 21st birthday (2019–2023)

• Cristina Martini,
• Muhammad Idham Darussalam Mardjan and
• Andrea Basso

Beilstein J. Org. Chem. 2024, 20, 1839–1879, doi:10.3762/bjoc.20.162

• from the dichloromethane extracts of the leaves of Caesalpinia platyloba by column chromatography, they performed a Vilsmeier–Haack formylation at the furan ring (Scheme 14) obtaining aldehyde 35 in 92% yield. This, in turn, was used as starting material in a GBB-3CR performed at room temperature to

Discovery of antimicrobial peptides clostrisin and cellulosin from Clostridium: insights into their structures, co-localized biosynthetic gene clusters, and antibiotic activity

• Moisés Alejandro Alejo Hernandez,
• Katia Pamela Villavicencio Sánchez,
• Rosendo Sánchez Morales,
• Karla Georgina Hernández-Magro Gil,
• David Silverio Moreno-Gutiérrez,
• Eddie Guillermo Sanchez-Rueda,
• Yanet Teresa-Cruz,
• Brian Choi,
• Armando Hernández Garcia,
• Alba Romero-Rodríguez,
• Oscar Juárez,
• Siseth Martínez-Caballero,
• Mario Figueroa and
• Corina-Diana Ceapă

Beilstein J. Org. Chem. 2024, 20, 1800–1816, doi:10.3762/bjoc.20.159

• purifications using affinity chromatography with a 1 mL His Trap nickel affinity column. Sonication lysis was performed and centrifuged during 30 min, at 8,000 rpm, 4 °C. The supernatants were loaded into the column. The column was washed with 5 column volumes of LanA wash buffer 1 (20 mM Tris pH 7.5, 500 mM

• . Affinity chromatography purification (Figure S7B in Supporting Information File 1) was performed for the C39 peptidase domain, resulting in a purity of approximately 96%, based on densitometric analysis of the Coomassie-stained gel. Protein yield was estimated using spectrophotometric quantification

• spectrum of clostrisin and cellulosin was acquired from the non-native affinity chromatography sample. Additionally, the MS2 spectra of the N27-C87 fragment with five and six dehydrations were obtained from the trypsin digestion of the cellulosin precursor peptide. Finally, the MS2 spectrum of the -K26 to

Harnessing unprotected deactivated amines and arylglyoxals in the Ugi reaction for the synthesis of fused complex nitrogen heterocycles

• Javier Gómez-Ayuso,
• Pablo Pertejo,
• Tomás Hermosilla,
• Israel Carreira-Barral,
• Roberto Quesada and
• María García-Valverde

Beilstein J. Org. Chem. 2024, 20, 1758–1766, doi:10.3762/bjoc.20.154

• chromatography column, while the more eco-friendly second strategy needs an additional stage for the reduction of the nitro group on the Ugi adduct. In order to find a more efficient synthesis, we thought that the second nitrogen in the diazepine nucleus could be incorporated without the need of surrogates or

Synthesis of polycyclic aromatic quinones by continuous flow electrochemical oxidation: anodic methoxylation of polycyclic aromatic phenols (PAPs)

• Hiwot M. Tiruye,
• Solon Economopoulos and
• Kåre B. Jørgensen

Beilstein J. Org. Chem. 2024, 20, 1746–1757, doi:10.3762/bjoc.20.153

• dimethoxylated quinones are somewhat labile but can be purified by rapid silica gel chromatography and stored for a few weeks. The controlled current and anhydrous conditions helped avoiding overoxidation. The substrates leading to p-quinones were more prone to overoxidation. The electrochemical oxidation of

• methanol to collect all reaction mixture. The solvents were evaporated under reduced pressure, and the crude purified by column chromatography to isolate the product. General procedure B: hydrolysis of acetals To a solution of the quinone acetal (0.15 mmol) in acetic acid (4 mL) were added 2 drops of conc

A fiber-optic spectroscopic setup for isomerization quantum yield determination

• Anouk Volker,
• Jorn D. Steen and
• Stefano Crespi

Beilstein J. Org. Chem. 2024, 20, 1684–1692, doi:10.3762/bjoc.20.150

• showed that the cis-azobenzene previously isolated by extensive irradiation [2], liquid chromatography [22], or preparative TLC [21][33] contained some of the trans-isomer. Their work highlights the care that needs to be taken to obtain correct values for the molar absorptivities of cis-azobenzene. This

Oxidation of benzylic alcohols to carbonyls using N-heterocyclic stabilized λ³-iodanes

• Thomas J. Kuczmera,
• Pim Puylaert and
• Boris J. Nachtsheim

Beilstein J. Org. Chem. 2024, 20, 1677–1683, doi:10.3762/bjoc.20.149

• equiv) and method A: aqueous HCl (37%, 500 µmol, 41.6 µL, 1.00 equiv) in EtOAc (2.5 mL) or method B: TBACl (500 µmol, 137 mg, 1.00 equiv) in MeCN (2.5 mL), respectively, were stirred at 60 °C for 2.5 h, quenched with Me2S (2.00 equiv) and the reaction mixture was purified via flash column chromatography

New triazinephosphonate dopants for Nafion proton exchange membranes (PEM)

• Fátima C. Teixeira,
• António P. S. Teixeira and
• C. M. Rangel

Beilstein J. Org. Chem. 2024, 20, 1623–1634, doi:10.3762/bjoc.20.145

• phosphite in the presence of zinc(II) bromide allowed the formation of diethyl [hydroxy(4-hydroxyphenyl)methyl]phosphonate (11) and tetraethyl [(4-hydroxyphenyl)methylene]bis(phosphonate) (13), which were separated by column chromatography (Scheme 3). The synthesis of pure tetraethyl [(4-hydroxyphenyl

• -hydroxyphenylphosphonate (2) in THF, with DIPEA as base, gave a mixture of products which was purified by column chromatography to afford the desired trisubstituted compound TP4 (Scheme 6). Since this reaction had a very low yield (17%), another base, Na2CO3, was used and compound TP4 was obtained in a good yield (76

• , purification of the crude product by column chromatography led to the decomposition of compound TP7. Another strategy was devised to obtain the desired triazinephosphonate TP7: The first step was the nucleophilic substitution of the chlorine atoms of triazine 1 by 4-hydroxybenzaldehyde (12), followed by the

Supramolecular assemblies of amphiphilic donor–acceptor Stenhouse adducts as macroscopic soft scaffolds

• Ka-Lung Hung,
• Leong-Hung Cheung,
• Yikun Ren,
• Ming-Hin Chau,
• Yan-Yi Lam,
• Takashi Kajitani and
• Franco King-Chi Leung

Beilstein J. Org. Chem. 2024, 20, 1590–1603, doi:10.3762/bjoc.20.142

• specified. All reactions were performed under nitrogen unless otherwise specified. Analytical thin-layer chromatography (TLC) was performed with Macherey-Nagel silica gel 60 UV254 aluminum plates, and visualization was accomplished by UV light (254 nm or 365 nm) or by staining with phosphomolybdic acid and

• heating. Flash column chromatography was performed using Macherey-Nagel silica gel 60 (230–400 mesh). Deuterated solvents were purchased from Cambridge Isotope Laboratories. UV–vis spectroscopy UV–vis measurements were performed on an Agilent Cary 60 UV–vis spectrophotometer with a quartz cuvette of 1 cm

Primary amine-catalyzed enantioselective 1,4-Michael addition reaction of pyrazolin-5-ones to α,β-unsaturated ketones

• Pooja Goyal,
• Akhil K. Dubey,
• Raghunath Chowdhury and
• Amey Wadawale

Beilstein J. Org. Chem. 2024, 20, 1518–1526, doi:10.3762/bjoc.20.136

• temperature. The crude reaction mixture was purified by silica gel (230–400 mesh) column chromatography (petroleum ether/EtOAc as the eluent) to give the product 3 or ent-3. Selected examples of drugs and bioactive molecules bearing a pyrazole core. Single crystal X-ray structure of ent-3ba (CCDC 2234286

• CHCl3 for 4–14 h. Next, Ac2O (0.52 mmol, 50 µL) was added followed by DABCO (0.1 mmol, 11 mg) and the reaction mixture was further stirred for 2 h at 30–32 °C. aIsolated yield of 3 or ent-3 after column chromatography. bEnantiomeric excess (ee) was measured by HPLC analysis using a stationary phase

• mol % catalyst II, 30 mol % A5 (for ent-3) in 1.0 mL CHCl3 for 14 h. Next, Ac2O (0.52 mmol, 50 µL) was added followed by DABCO (0.1 mmol, 11 mg) and the reaction mixture was further stirred for 2 h at 30–32°C. aIsolated yield of 3 or ent-3 after column chromatography. bEnantiomeric excess (ee) was

Tetrabutylammonium iodide-catalyzed oxidative α-azidation of β-ketocarbonyl compounds using sodium azide

• Christopher Mairhofer,
• David Naderer and
• Mario Waser

Beilstein J. Org. Chem. 2024, 20, 1510–1517, doi:10.3762/bjoc.20.135

• decomposition and also some decarboxylation during column chromatography or upon prolonged reaction times. Also, tests with analogous β-ketoketones and β-ketoamides (compare with azidation products 5 and 6, Scheme 3) did not give any products but resulted in the formation of a variety of unidentified side

• were recorded on an Agilent QTOF 6520 spectrometer with an ESI source. Melting points are recorded using a Büchi M-560 apparatus and are reported uncorrected. TLC was performed on Macherey-Nagel pre-coated TLC plates (silica gel, 60 F254, 0.20 mm, ALUGRAM® Xtra SIL). Preparative column chromatography

• vacuo. In most cases the products were already obtained in sufficiently high purity (>95%) after this work up. If necessary, further purification by silica gel column chromatography can be carried out. Safety considerations: It is known that the combination of inorganic azides and halogenated compounds

Towards an asymmetric β-selective addition of azlactones to allenoates

• Behzad Nasiri,
• Ghaffar Pasdar,
• Paul Zebrowski,
• Katharina Röser,
• David Naderer and
• Mario Waser

Beilstein J. Org. Chem. 2024, 20, 1504–1509, doi:10.3762/bjoc.20.134

• residual water during column chromatography. Unfortunately, attempts to assign the absolute configuration of products 5 failed, as we have not been able to obtain any crystals suited for single crystal X-ray diffraction analysis. Finally, we also tested the suitability of products 5 to access acyclic α-AA

Photoswitchable glycoligands targeting Pseudomonas aeruginosa LecA

• Yu Fan,
• Ahmed El Rhaz,
• Stéphane Maisonneuve,
• Emilie Gillon,
• Maha Fatthalla,
• Franck Le Bideau,
• Guillaume Laurent,
• Samir Messaoudi,
• Anne Imberty and
• Juan Xie

Beilstein J. Org. Chem. 2024, 20, 1486–1496, doi:10.3762/bjoc.20.132

• equivalents of dihydroxyazobenzene 6 were used for the selective monoglycosylation step, with the excess of azobenene being recovered after column chromatography. Under these conditions, no bisglycosylated azobenzene was observed [28]. The observed 1,2-trans glycosylation could be explained either by the

• with 10% H2SO4 in EtOH and heating about 30 s at 400–600 °C. Column chromatography purification was performed on CombiFlash® Rf+ and RediSep® RF or RF Gold normal phase silica columns (with UV detection at 254 and 350 nm for all azobenzene derivatives), or by flash column chromatography employing

• concentrated under reduced pressure and purified by flash chromatography (cyclohexane/EtOAc 7:3) to give the thioglycoside. General procedure IV for the Zemplén deacetylation: To a seal tube containing the galactose derivatives in dry MeOH (0.15 M), NaOMe (30 mol %, 0.5 M sol. in MeOH) was added. The mixture

Synthesis of 2-benzyl N-substituted anilines via imine condensation–isoaromatization of (E)-2-arylidene-3-cyclohexenones and primary amines

• Lu Li,
• Na Li,
• Xiao-Tian Mo,
• Ming-Wei Yuan,
• Lin Jiang and
• Ming-Long Yuan

Beilstein J. Org. Chem. 2024, 20, 1468–1475, doi:10.3762/bjoc.20.130

• purified by column chromatography on silica gel to give product 4. In the case of reacting with 3-NO2 bearing 2f, 2-benzylphenol 5f was partially obtained together with normal product 4fa. 4-CN substituted 2o generated 2-benzylphenol 5o exclusively. Synthesis of aniline derivatives from 2-cyclohexenones or

Rapid construction of tricyclic tetrahydrocyclopenta[4,5]pyrrolo[2,3-b]pyridine via isocyanide-based multicomponent reaction

• Xiu-Yu Chen,
• Ying Han,
• Jing Sun and
• Chao-Guo Yan

Beilstein J. Org. Chem. 2024, 20, 1436–1443, doi:10.3762/bjoc.20.126

• one hour. After removing the solvent by rotatory evaporation at reduced pressure, the residue was subjected to column chromatography with a mixture of ethyl acetate and petroleum ether (v/v = 1:4) as eluent to give the pure product for analysis. Pentamethyl rel-(4R,4aR,4bS,8aS)-1-benzyl-8-cyclohexyl-4

Synthesis of cyclic β-1,6-oligosaccharides from glucosamine monomers by electrochemical polyglycosylation

• Md Azadur Rahman,
• Hirofumi Endo,
• Takashi Yamamoto,
• Shoma Okushiba,
• Norihiko Sasaki and
• Toshiki Nokami

Beilstein J. Org. Chem. 2024, 20, 1421–1427, doi:10.3762/bjoc.20.124

• was further washed with aqueous 1 M HCl solution and dried over Na2SO4. Then, the solvent was removed under reduced pressure, and the crude product (220 mg) was purified with recycling preparative gel permeation chromatography equipped with two series-connected JAIGEL-2HH columns (eluent: CHCl3, flow

Challenge N- versus O-six-membered annulation: FeCl₃-catalyzed synthesis of heterocyclic N,O-aminals

• Giacomo Mari,
• Lucia De Crescentini,
• Gianfranco Favi,
• Fabio Mantellini,
• Diego Olivieri and
• Stefania Santeusanio

Beilstein J. Org. Chem. 2024, 20, 1412–1420, doi:10.3762/bjoc.20.123

• dissolved in DCM (10 mL), FeCl3 (30 mol %) added and magnetically stirred at room temperature. Within 2–30 h, the reactions went to completion (TLC monitoring), affording, at last, N,O-aminals 5a–r (42–82%) and the corresponding hemiaminals 6a–p (4–35%) after column chromatography (Scheme 3). An increased

Sustainable tandem acylation/Diels–Alder reaction toward versatile tricyclic epoxyisoindole-7-carboxylic acids in renewable green solvents

• Ayhan Yıldırım

Beilstein J. Org. Chem. 2024, 20, 1308–1319, doi:10.3762/bjoc.20.114

• . Louis, MO), or Acros Organics (Thermo Fisher Scientific, Geel, Belgium) and used without further purification. Thin-layer chromatography was performed using silica gel (60 F254, Merck, Darmstadt, Germany) plates. Melting points were recorded by Büchi melting point B-540 apparatus (Büchi Labortechnik AG

Diameter-selective extraction of single-walled carbon nanotubes by interlocking with Cu-tethered square nanobrackets

• Guoqing Cheng and
• Naoki Komatsu

Beilstein J. Org. Chem. 2024, 20, 1298–1307, doi:10.3762/bjoc.20.113

• depend on their structures [1]. To obtain specific structures, remarkable progress has been made in separation of SWNTs by various methods such as gel column chromatography [2][3], aqueous two-phase extraction (ATPE) [4][5], and polymer wrapping [6][7]. As compared with these methods, our separation by

Synthesis of indano[60]fullerene thioketone and its application in organic solar cells

• Yong-Chang Zhai,
• Shimon Oiwa,
• Shinobu Aoyagi,
• Shohei Ohno,
• Tsubasa Mikie,
• Jun-Zhuo Wang,
• Hirofumi Amada,
• Koki Yamanaka,
• Kazuhira Miwa,
• Naoyuki Imai,
• Takeshi Igarashi,
• Itaru Osaka and
• Yutaka Matsuo

Beilstein J. Org. Chem. 2024, 20, 1270–1277, doi:10.3762/bjoc.20.109

• amount of Lawesson's reagent was increased to 3 equiv (Table 1, entry 5), the signal of thioketone was observed for the first time by high-performance liquid chromatography (HPLC) and MALDI time-of-flight mass spectrometry. Subsequently, a conversion of 99% was achieved by further increasing the amount

Domino reactions of chromones with activated carbonyl compounds

• Peter Langer

Beilstein J. Org. Chem. 2024, 20, 1256–1269, doi:10.3762/bjoc.20.108

• dienes has to proceed with full conversion and in high yield as the they cannot be purified by chromatography. Distillation is also problematic, as dienes containing substituents located at carbon atom C-2 readily undergo isomerization reactions. The reactions of 1,3-bis(silyloxy)-1,3-butadienes with

Competing electrophilic substitution and oxidative polymerization of arylamines with selenium dioxide

• Vishnu Selladurai and
• Selvakumar Karuthapandi

Beilstein J. Org. Chem. 2024, 20, 1221–1235, doi:10.3762/bjoc.20.105

• oxidative polymerization in the presence of SeO2. After recognizing the polymeric nature of the solid, we analyzed the small molecular species present in the supernatant. Thin-layer chromatography (TLC) of the supernatant revealed that it contained a mixture of compounds. We could not isolate monoselenide 1

• as a pure compound through column chromatography. The obtained fraction was a black solid as reported by Bhat et al., and HRMS analysis revealed a peak at m/z 265.0229, corresponding to [M + H]+ (Figure S4, Supporting Information File 1). However, we could not ascertain the identity of the compound

• methyl anthranilate with SeO2 (vide infra), which was also supported by single-crystal X-ray analysis. However, for aniline, in addition to the major polymerization and poor selenation process, solvent oxidation was also noted. Importantly, through column chromatography, the oxamide derivative 3 formed

Cofactor-independent C–C bond cleavage reactions catalyzed by the AlpJ family of oxygenases in atypical angucycline biosynthesis

• Jinmin Gao,
• Liyuan Li,
• Shijie Shen,
• Guomin Ai,
• Bin Wang,
• Fang Guo,
• Tongjian Yang,
• Hui Han,
• Zhengren Xu,
• Guohui Pan and
• Keqiang Fan

Beilstein J. Org. Chem. 2024, 20, 1198–1206, doi:10.3762/bjoc.20.102

• -morpholino)propanesulfonic acid (MOPS) buffer (pH 7.5), and the cells were disrupted by ultrasonication to obtain the cell extract. Cell debris was removed by centrifugation (14,000g, 15 min). The proteins were purified by Ni-NTA agarose chromatography, desalted, and concentrated by centrifugation (8,000g

• , 30 min) in 10 kDa ultrafiltration tubes (Centriplus YM series, Merck Millipore). Protein concentration was quantified by the Bradford method. AlpJ, JadG, JadH, and E. coli flavin reductase (Fre) were overproduced and purified by Ni-NTA agarose chromatography as described previously [10][11][43][44